Clostridial neurotoxins comprising an exogenous activation loop

An engineered clostridial neurotoxin comprising an activation loop that comprises an amino acid sequence of the formula Cys-(Xaa)a-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys(SEQ ID NO: 1), wherein a is an integer from 1 to 10, b is an integer from 4 to 15, each iteration of Xaa and Yaa individually represents an amino acid, and the engineered clostridial neurotoxin is not BoNT/C1, a method for producing the same, a method of treating a disease or condition comprising administering the engineered clostridial neurotoxin or the corresponding di-chain clostridial neurotoxin, a composition comprising the engineered clostridial neurotoxin or the corresponding di-chain clostridial neurotoxin, and a polynucleotide encoding the engineered clostridial neurotoxin. A method for proteolytically processing a single-chain clostridial neurotoxin into a corresponding di-chain clostridial neurotoxin, the method comprising contacting the single-chain clostridial neurotoxin with enterokinase or factor Xa and a di-chain clostridial neurotoxin produced using such a method. A method for hydrolyzing a peptide bond of a polypeptide comprising contacting the polypeptide with an enterokinase.

1. 11. A method for proteolytically processing a single-chain clostridial neurotoxin into a corresponding di-chain clostridial neurotoxin, the method comprising contacting the single-chain clostridial neurotoxin with enterokinase, wherein the single-chain clostridial neurotoxin comprises an activation loop comprising the amino acid sequence of SEQ ID NO: 18 and wherein the amino acid sequence of the single-chain clostridial neurotoxin comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 5, 7, 9, 11, and 13, and wherein the enterokinase hydrolyses a peptide bond of the activation loop thereby producing the di-chain clostridial neurotoxin.
2. 22. The method of claim 1, wherein the single-chain clostridial neurotoxin comprises the amino acid sequence of SEQ ID NO: 5.
3. 33. A method for proteolytically processing a single-chain clostridial neurotoxin into a corresponding di-chain clostridial neurotoxin, the method comprising contacting the single-chain clostridial neurotoxin with enterokinase, wherein the single-chain clostridial neurotoxin comprises an activation loop comprising the amino acid sequence of SEQ ID NO: 18 and wherein the amino acid sequence of the single-chain clostridial neurotoxin comprises: (a) the amino acid sequence of SEQ ID NO: 52 or a fragment thereof; and (b) an amino acid sequence selected from the group consisting of SEQ ID NO: 53, 54, 55, 56, 57, 58, 59, and 60, and wherein the enterokinase hydrolyses a peptide bond of the activation loop thereby producing the di-chain clostridial neurotoxin.
4. 44. The method of claim 3, wherein the single-chain clostridial neurotoxin comprises the amino acid sequence of SEQ ID NO: 60.
5. 55. The method of claim 3, wherein the single-chain clostridial neurotoxin lacks a functional Hc domain of a clostridial neurotoxin.
6. 66. The method of claim 3, wherein the single-chain clostridial neurotoxin is a retargeted clostridial neurotoxin comprising a non-clostridial targeting moiety.

This application is a U.S. national stage filing of International Patent Application No. PCT/GB2019/052732, filed Sep. 27, 2019, which claims the priority of British Application No. 1815817.0, filed Sep. 28, 2018.
The instant application contains a Sequence Listing which has been submitted electronically in ASCII format and is hereby incorporated by reference in its entirety. Said ASCII copy, created on May 31, 2024, is named 79904-335825 SL.txt and is 349,679 bytes in size.
The present invention relates to clostridial neurotoxins and methods for activating and using the same.
Bacteria in the genus Clostridia produce highly potent and specific protein toxins, which can poison neurons and other cells to which they are delivered. Examples of such clostridial neurotoxins include the neurotoxins produced by C. tetani (TeNT) and by C. botulinum (BoNT) serotypes A-G, and X (see WO 2018/009903 A2), as well as those produced by C. baratii and C. butyricum. 
Among the clostridial neurotoxins are some of the most potent toxins known. By way of example, botulinum neurotoxins have median lethal dose (LD50) values for mice ranging from 0.5 to 5 ng/kg, depending on the serotype. Both tetanus and botulinum toxins act by inhibiting the function of affected neurons, specifically the release of neurotransmitters. While botulinum toxin acts at the neuromuscular junction and inhibits cholinergic transmission in the peripheral nervous system, tetanus toxin acts in the central nervous system.
Clostridial neurotoxins are expressed as single-chain polypeptides in Clostridium. Each clostridial neurotoxin has a catalytic light chain separated from the heavy chain (encompassing the N-terminal translocation domain and the C-terminal receptor binding domain) by an exposed region called the activation loop. During protein maturation proteolytic cleavage of the activation loop separates the light and heavy chain of the clostridial neurotoxin, which are held together by a disulphide bridge, to create fully active di-chain toxin. This process must be reproduced during recombinant toxin production.
Exogenous proteases such as trypsin or Lys-C are used for proteolytically activating single-chain clostridial neurotoxins. However, for some clostridial neurotoxins, incubation with Lys-C or trypsin results in partial or improper cleavage of the single-chain polypeptide resulting in the production of contaminating single-chain and/or inactive cleavage/degradation products (e.g. in the case of BoNT/E), necessitating purification of the full-length di-chain polypeptide. Thus, at present there is no universal exogenous protease for activation of clostridial neurotoxins. This is particularly problematic upon identification of a new clostridial neurotoxin or production of a modified (e.g. chimeric or hybrid) neurotoxin, which requires screening of multiple proteases to determine correct activation.
Botulinum neurotoxin serotype X (BoNT/X) was recently identified (WO 2018/009903 A2). It has been found that BoNT/X is particularly problematic to activate, and cleavage with trypsin or Lys-C completely degrades the polypeptide.
The present invention overcomes one or more of the above-mentioned problems.
The protease enterokinase exhibits a much higher substrate specificity compared to conventionally used trypsin and Lys-C. This protease recognises and cleaves immediately C-terminal to a DDDDK peptide sequence (SEQ ID NO: 72). Notably, this sequence is absent from all of the clostridial neurotoxin activation loops (see FIG. 1), thus enterokinase has previously been ruled out as a protease for use in activating clostridial neurotoxins.
The present inventors have surprisingly found that enterokinase recognises and cleaves immediately C-terminal to an IDGR sequence present in the BoNT/C1 activation loop (see FIG. 1). Advantageously, this sequence can also be recognised and cleaved by factor Xa, another protease exhibiting high substrate specificity (e.g. compared to trypsin and Lys-C). Moreover, the BoNT/C1 activation loop also has lysine and arginine residues, allowing cleavage by either lysine or trypsin. Thus, the present inventors have surprisingly found that the BoNT/C1 loop constitutes a universal activation loop for clostridial neurotoxins, thus providing the flexibility to use four different proteases.
In one aspect the invention provides a method for proteolytically processing a single-chain clostridial neurotoxin (e.g. of an engineered clostridial neurotoxin described herein) into a corresponding di-chain clostridial neurotoxin, the method comprising:

    
    
        a. providing a single-chain clostridial neurotoxin; and
        b. contacting the single-chain clostridial neurotoxin with enterokinase;
        wherein the single-chain clostridial neurotoxin has an activation loop comprising the polypeptide sequence Cys-(Xaa)a-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys (SEQ ID NO: 1); and
        wherein enterokinase hydrolyses a peptide bond of the activation loop thereby producing a di-chain clostridial neurotoxin (e.g. an engineered di-chain clostridial neurotoxin described herein).
    
    


In a related aspect the invention provides a method for proteolytically processing a single-chain clostridial neurotoxin (e.g. of an engineered clostridial neurotoxin described herein) into a corresponding di-chain clostridial neurotoxin, the method comprising:
a. providing a single-chain clostridial neurotoxin; and
b. contacting the single-chain clostridial neurotoxin with factor Xa;
wherein the single-chain clostridial neurotoxin has an activation loop comprising the polypeptide sequence Cys-(Xaa)a-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys (SEQ ID NO: 1); and
wherein factor Xa hydrolyses a peptide bond of the activation loop thereby producing a di-chain clostridial neurotoxin (e.g. an engineered di-chain clostridial neurotoxin described herein).
The single-chain clostridial neurotoxin is preferably an engineered single-chain clostridial neurotoxin of the present invention, wherein the activation loop is an exogenous activation loop. Advantageously, the present inventors have found that replacing an endogenous clostridial neurotoxin activation loop with an exogenous activation loop shown as SEQ ID NO: 1 (which contains a protease cleavage site in its natural context) overcomes problems associated with modifying an endogenous activation loop to insert a protease cleavage site (e.g. a factor Xa cleavage site, such as Ile-Asp-Gly-Arg [SEQ ID NO: 18] or Ile-Glu-Gly-Arg [SEQ ID NO: 19]). In particular, modifying an endogenous activation loop to insert a protease cleavage site can lead to conformational changes, which, in turn, can have a negative effect on cleavage efficiency (see Example 7 herein).
In a particularly preferred embodiment the methods of the present invention comprise the use of enterokinase.
In one aspect the present invention is directed to use of enterokinase for hydrolysing a peptide bond of a polypeptide (e.g. a clostridial neurotoxin) comprising a sequence shown as SEQ ID NO: 18 or SEQ ID NO: 19 (preferably SEQ ID NO: 18). Preferably enterokinase hydrolyses a peptide bond immediately C-terminal to SEQ ID NO: 18 or SEQ ID NO: 19 (more preferably SEQ ID NO: 18) comprised within the polypeptide sequence. In one embodiment a polypeptide comprises a polypeptide sequence shown as SEQ ID NO: 1 or a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 2 or SEQ ID NO: 3.
The present invention also provides a method for manufacturing an engineered clostridial neurotoxin, the method comprising:

    
    
        a. identifying an endogenous activation loop of a clostridial neurotoxin, wherein the clostridial neurotoxin is characterised in that a peptide bond outside of the endogenous activation loop of the clostridial neurotoxin is hydrolysed by trypsin or Lys-C; and
        b. replacing the endogenous activation loop with an exogenous activation loop thereby providing an engineered clostridial neurotoxin, wherein the exogenous activation loop comprises the polypeptide sequence Cys-(Xaa)a-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys (SEQ ID NO: 1).
    
    


The present invention also provides a method for manufacturing an engineered clostridial neurotoxin, the method comprising:

    
    
        a. identifying an endogenous activation loop of a clostridial neurotoxin, wherein the clostridial neurotoxin is characterised in that the endogenous activation loop is inefficiently proteolytically processed by trypsin or Lys-C; and
        b. replacing the endogenous activation loop with an exogenous activation loop thereby providing an engineered clostridial neurotoxin, wherein the exogenous activation loop comprises the polypeptide sequence Cys-(Xaa)a-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys (SEQ ID NO: 1).
    
    


In one embodiment the clostridial neurotoxin is characterised in that a peptide bond outside of the endogenous activation loop of the clostridial neurotoxin is hydrolysed by trypsin or Lys-C and the endogenous activation loop is inefficiently proteolytically processed by trypsin or Lys-C.
In embodiments where the endogenous activation loop is inefficiently proteolytically processed by trypsin (and preferably a peptide bond outside of the endogenous activation loop of the clostridial neurotoxin is not hydrolysed by trypsin), the method may further comprise contacting an engineered clostridial neurotoxin with trypsin, which is capable of hydrolysing a peptide bond in the exogenous activation loop of the engineered clostridial neurotoxin. Similarly, in embodiments where the endogenous activation loop is inefficiently proteolytically processed by Lys-C (and preferably a peptide bond outside of the endogenous activation loop of the clostridial neurotoxin is not hydrolysed by Lys-C), the method may further comprise contacting an engineered clostridial neurotoxin with Lys-C, which is capable of hydrolysing a peptide bond in the exogenous activation loop of the engineered clostridial neurotoxin.
In one embodiment a method comprises a step of screening a clostridial neurotoxin for its suitability for use in a method of the invention. The screening step may comprise determining whether a peptide bond outside of the endogenous activation loop of the clostridial neurotoxin is hydrolysed by trypsin or Lys-C. Alternatively or additionally, the screening step may comprise determining whether the endogenous activation loop of a clostridial neurotoxin is inefficiently proteolytically processed by trypsin or Lys-C.
In contrast to the clostridial neurotoxin (pre-engineering) in one embodiment an engineered clostridial neurotoxin of the invention is not inefficiently proteolytically processed by enterokinase or factor Xa and/or a peptide bond outside of the exogenous activation loop of the engineered clostridial neurotoxin is not hydrolysed by enterokinase or factor Xa. Thus, the clostridial neurotoxin (pre-engineering) is preferably resistant to proteolytic processing by enterokinase and/or factor Xa.
A clostridial neurotoxin may be identified as being suitable for engineering in a method of the invention by an assay comprising contacting 1 mg of clostridial neurotoxin with at least 0.25 μg of trypsin at ≥3350 units/mg or Lys-C at ≥200 units/mg in a 50 mM Tris-HCl pH 8.0, 50 mM NaCl reaction buffer for at least 5 hours at at least 4° C.
In one embodiment the assay comprises contacting 1 mg of clostridial neurotoxin with 0.25 μg of trypsin at ≥3350 units/mg (˜1:611 molar ratio of clostridial neurotoxin to trypsin) or Lys-C at ≥200 units/mg (˜1:734 molar ratio of clostridial neurotoxin to Lys-C) in a 50 mM Tris-HCl pH 8.0, 50 mM NaCl reaction buffer for 18 hours at 4° C.
In another embodiment the assay comprises contacting 1 mg of clostridial neurotoxin with 0.40 μg of trypsin at ≥3350 units/mg (˜1:978 molar ratio of clostridial neurotoxin to trypsin) or Lys-C at ≥200 units/mg (˜1:1174 molar ratio of clostridial neurotoxin to Lys-C) in a 50 mM Tris-HCl pH 8.0, 50 mM NaCl reaction buffer for 5 hours at 20° C.
The trypsin used is preferably commercially available TrypZean (Sigma #T3568). Trypsin may have a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 47. In one embodiment trypsin may have a polypeptide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 47. Preferably trypsin may have a polypeptide sequence shown as SEQ ID NO: 47. One unit of said trypsin (Trypzean) is defined as the amount of enzyme that will produce a change of absorbance at 253 nm of 0.003 per min at pH 7.6 at 25° C. using 0.23 mM Na-Benzoyl-L-Arginine Ethyl Ester Solution (BAEE) as substrate in a reaction volume of 3.2 mL.
The Lys-C used is preferably commercially available Lys-C(Sigma #000000011047825001). Lys-C may have a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 48. In one embodiment Lys-C may have a polypeptide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 48. Preferably Lys-C may have a polypeptide sequence shown as SEQ ID NO: 48. One unit of said Lys-C is defined as the amount of enzyme that will hydrolyze 1.0 μmol Tos-Gly-Pro-Lys-pNA per min at 25° C., pH 7.
If one or more cleavage products additional to those of the H-chain and L-chain of the clostridial neurotoxin are observed by SDS-PAGE (preferably when stained with Coomassie or a dye of equivalent sensitivity), then it is confirmed that a peptide bond outside of the endogenous activation loop of the clostridial neurotoxin is hydrolysed by trypsin or Lys-C. Preferably if at least 3, 4, 5, 6, 7, 8, 9 or 10 cleavage products additional to those of the chain and L-chain of the clostridial neurotoxin are observed by SDS-PAGE after carrying out an assay described above, then it is confirmed that a peptide bond outside of the endogenous activation loop of the clostridial neurotoxin is hydrolysed by trypsin or Lys-C.
Additionally or alternatively, if less than 70% of endogenous activation loop is proteolytically processed by trypsin or Lys-C to yield a di-chain clostridial neurotoxin (assessed by way of SDS-PAGE, preferably when stained with Coomassie or a dye of equivalent sensitivity, after carrying out an assay described above), then it is confirmed that the endogenous activation loop is inefficiently proteolytically cleaved by trypsin or Lys-C. Preferably if less than 60%, 50%, 40%, 30%, 10% or 5% of endogenous activation loop is proteolytically processed by trypsin or Lys-C (assessed by way of SDS-PAGE after carrying out an assay described above) then the clostridial neurotoxin can be characterised in that the endogenous activation loop is inefficiently proteolytically cleaved by trypsin or Lys-C. More preferably if less than 30% of endogenous activation loop is proteolytically processed by trypsin or Lys-C (assessed by way of SDS-PAGE after carrying out an assay described above) then the clostridial neurotoxin can be characterised in that the endogenous activation loop is inefficiently proteolytically cleaved by trypsin or Lys-C.
A clostridial neurotoxin (pre-engineering) is preferably one in which a peptide bond (either within or outside of the activation loop) is not, or is not substantially, hydrolysed by enterokinase or factor Xa. The term “not substantially hydrolysed” means that less than 10%, 5%, 4%, 3%, 2% or 1% of the clostridial neurotoxin present in a reaction contains a peptide bond that has been hydrolysed by enterokinase or factor Xa in a method of the invention.
In one embodiment a method of the invention further comprises contacting an engineered clostridial neurotoxin with enterokinase or factor Xa (more preferably enterokinase) thereby producing a corresponding di-chain engineered clostridial neurotoxin.
In one aspect the invention provides an engineered clostridial neurotoxin (e.g. obtainable by a method of the invention), wherein an endogenous activation loop of a clostridial neurotoxin has been replaced by an exogenous activation loop thereby providing an engineered clostridial neurotoxin,

    
    
        wherein the exogenous activation loop comprises the polypeptide sequence Cys-(Xaa)a-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys (SEQ ID NO: 1).
    
    


In one embodiment the clostridial neurotoxin (pre-engineering) is characterised in that: a peptide bond outside of the endogenous activation loop of the clostridial neurotoxin is hydrolysed by trypsin or Lys-C. In one embodiment the clostridial neurotoxin (pre-engineering) is characterised in that: the endogenous activation loop is inefficiently proteolytically processed by trypsin or Lys-C. In another embodiment the clostridial neurotoxin (pre-engineering) is characterised in that: a peptide bond outside of the endogenous activation loop of the clostridial neurotoxin is hydrolysed by trypsin or Lys-C; and the endogenous activation loop is inefficiently proteolytically processed by trypsin or Lys-C. Confirmation of these features of the clostridial neurotoxin (pre-engineering) is preferably by way of an aforementioned assay.
The invention may comprise replacing an endogenous activation loop of any clostridial neurotoxin with an exogenous activation loop described herein. Preferably the clostridial neurotoxin is not BoNT/C1. The clostridial neurotoxin may be a botulinum neurotoxin or a tetanus neurotoxin. Preferably the clostridial neurotoxin is a botulinum neurotoxin (BoNT), such as BoNT/A, BoNT/B, BoNT/D, BoNT/E, BoNT/F, BoNT/G or BoNT/X.
In one embodiment a clostridial neurotoxin for use in the present invention is BoNT/X, BoNT/E or a BoNT/A1C1 hybrid. Preferably the clostridial neurotoxin is BoNT/X or BoNT/E, both of which have been characterised in that trypsin and/or Lys-C hydrolyses a peptide bond outside of the endogenous activation loop thereof, and/or in that both clostridial neurotoxins contain an endogenous activation loop that is inefficiently proteolytically processed by trypsin and/or Lys-C. Most preferably a clostridial neurotoxin for use in the present invention is BoNT/X.
The term “endogenous activation loop” as used herein means an activation loop present in a subject clostridial neurotoxin, e.g. a subject clostridial neurotoxin of the indicated serotype. For example, BoNT/A1 includes a BoNT/A1 heavy chain and light chain, thus the endogenous activation loop of BoNT/A1 is an A1 activation loop. For clostridial neurotoxin chimeras or hybrids, the person skilled in the art can identify the “endogenous activation loop”, for example by determining the serotype(s) from which the L-chain and HN domain are derived. In some embodiments, a chimera or hybrid clostridial neurotoxin may have an endogenous activation loop that is a fusion of an activation loop from two different serotypes. By way of example, a chimeric clostridial neurotoxin such as BoNT/A1C1 has a BoNT/A1 light chain and translocation domain, thus the endogenous BoNT/A1C1 activation loop is an A1 activation loop. Examples of activation loops are provided in FIG. 1.
Preferably an “endogenous activation loop” is any activation loop that is not SEQ ID NO: 1. In one embodiment an “endogenous activation loop” is any activation loop that is not SEQ ID NO: 2 and/or SEQ ID NO: 3.
By contrast, an “exogenous activation loop” as used herein means an activation loop that is different to the endogenous activation loop present in a subject clostridial neurotoxin, e.g. a subject clostridial neurotoxin of the indicated serotype. For example, a BoNT/C1 activation loop has a different polypeptide sequence to a wild-type BoNT/A1 activation loop, therefore the BoNT/C1 activation loop is exogenous to BoNT/A1. For clostridial neurotoxin chimeras or hybrids, the person skilled in the art can determine whether an activation loop is an “exogenous activation loop”, for example by determining the serotype(s) from which the L-chain and HN domain are derived. Where the L-chain is a BoNT/B L-chain and the HN domain is from BoNT/D, the endogenous activation loop may have a portion of a BoNT/B sequence and a portion of a BoNT/D sequence, and if an activation loop (e.g. a C1 activation loop) is different thereto, it is considered an “exogenous activation loop”.
Determination of whether an activation loop is an “exogenous activation loop” may be made by aligning the sequence of a subject clostridial neurotoxin with the activation loop, and seeing if the activation loop is present in the subject clostridial neurotoxin sequence. If it is absent, then the activation loop can be identified as an exogenous activation loop.
Preferably, the entire endogenous activation loop is replaced by an exogenous activation loop described herein. However, in some embodiments a portion of the endogenous activation loop is replaced, such as at least 5, 10, 15, 20, 25, 30, 35 or 40 amino acid residues of the endogenous activation are replaced.
Replacement of an endogenous activation loop may be achieved by any method known in the art. For example, replacement might be achieved by way of an amino acid modification. In one embodiment an endogenous activation loop may be replaced by deleting one or more amino acid residues of the endogenous activation loop. An endogenous activation loop may be replaced by substituting one or more amino acid residues of the endogenous activation loop with amino acid residues of an exogenous activation loop. In some embodiments an endogenous activation loop (or a portion thereof) may be deleted, and an exogenous activation loop inserted, preferably at the position formally occupied by the endogenous activation loop. Alternatively, the endogenous activation loop may be retained in an engineered clostridial neurotoxin of the invention, and preferably inactivated (e.g. by way of mutation). It is preferred that the endogenous activation loop (or a portion thereof, more preferably the entire endogenous activation loop) is not present in the engineered clostridial neurotoxin of the invention. It is preferred that the exogenous activation loop occupies the position in the clostridial neurotoxin formally occupied by the endogenous activation loop.
Methods for modifying proteins by substitution, insertion or deletion of amino acid residues are known in the art and may be employed in the practice of the present invention. By way of example, amino acid modifications may be introduced by modification of a DNA sequence encoding a clostridial neurotoxin. This can be achieved using standard molecular cloning techniques, for example by site-directed mutagenesis where short strands of DNA (oligonucleotides) coding for the desired amino acid(s) are used to replace the original coding sequence using a polymerase enzyme, or by inserting/deleting parts of the gene with various enzymes (e.g., ligases and restriction endonucleases). Alternatively a modified gene sequence can be chemically synthesised.
In one embodiment an endogenous activation loop comprises a polypeptide sequence having at least 70% (e.g. at least 80% or 90%) sequence identity to SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO: 22, SEQ ID NO: 23, SEQ ID NO: 24, SEQ ID NO: 25, SEQ ID NO: 26, SEQ ID NO: 27, SEQ ID NO: 28, SEQ ID NO: 29, SEQ ID NO: 30, SEQ ID NO: 31, SEQ ID NO: 61, SEQ ID NO: 62, SEQ ID NO: 63, SEQ ID NO: 64, SEQ ID NO: 65, SEQ ID NO: 66, SEQ ID NO: 67, SEQ ID NO: 68, SEQ ID NO: 69, SEQ ID NO: 70 or SEQ ID NO: 71. In one embodiment an endogenous activation loop comprises a polypeptide sequence having at least 95% sequence identity to SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO: 22, SEQ ID NO: 23, SEQ ID NO: 24, SEQ ID NO: 25, SEQ ID NO: 26, SEQ ID NO: 27, SEQ ID NO: 28, SEQ ID NO: 29, SEQ ID NO: 30, SEQ ID NO: 31, SEQ ID NO: 61, SEQ ID NO: 62, SEQ ID NO: 63, SEQ ID NO: 64, SEQ ID NO: 65, SEQ ID NO: 66, SEQ ID NO: 67, SEQ ID NO: 68, SEQ ID NO: 69, SEQ ID NO: 70 or SEQ ID NO: 71. Preferably, an endogenous activation loop comprises a polypeptide sequence shown as SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO: 22, SEQ ID NO: 23, SEQ ID NO: 24, SEQ ID NO: 25, SEQ ID NO: 26, SEQ ID NO: 27, SEQ ID NO: 28, SEQ ID NO: 29, SEQ ID NO: 30, SEQ ID NO: 31, SEQ ID NO: 61, SEQ ID NO: 62, SEQ ID NO: 63, SEQ ID NO: 64, SEQ ID NO: 65, SEQ ID NO: 66, SEQ ID NO: 67, SEQ ID NO: 68, SEQ ID NO: 69, SEQ ID NO: 70 or SEQ ID NO: 71.
In one embodiment an endogenous activation loop comprises a polypeptide sequence having at least 70% (e.g. at least 80% or 90%) sequence identity to SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO: 24, SEQ ID NO: 62, SEQ ID NO: 63, SEQ ID NO: 64, SEQ ID NO: 65, SEQ ID NO: 67, SEQ ID NO: 68 or SEQ ID NO: 69. In one embodiment an endogenous activation loop comprises a polypeptide sequence having at least 95% sequence identity to SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO: 24, SEQ ID NO: 62, SEQ ID NO: 63, SEQ ID NO: 64, SEQ ID NO: 65, SEQ ID NO: 67, SEQ ID NO: 68 or SEQ ID NO: 69. Preferably, an endogenous activation loop comprises a polypeptide sequence shown as SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO: 24, SEQ ID NO: 62, SEQ ID NO: 63, SEQ ID NO: 64, SEQ ID NO: 65, SEQ ID NO: 67, SEQ ID NO: 68 or SEQ ID NO: 69.
In one embodiment an endogenous activation loop comprises a polypeptide sequence having at least 70% (e.g. at least 80% or 90%) sequence identity to SEQ ID NO: 20, SEQ ID NO: 21 or SEQ ID NO: 24. In one embodiment an endogenous activation loop comprises a polypeptide sequence having at least 95% sequence identity to SEQ ID NO: 20, SEQ ID NO: 21 or SEQ ID NO: 24. Preferably, an endogenous activation loop comprises a polypeptide sequence shown as SEQ ID NO: 20, SEQ ID NO: 21 or SEQ ID NO: 24.
Preferably an endogenous activation loop comprises a polypeptide sequence having at least 70% (e.g. at least 80% or 90%) sequence identity to SEQ ID NO: 20. In one embodiment an endogenous activation loop comprises a polypeptide sequence having at least 95% sequence identity to SEQ ID NO: 20. More preferably, an endogenous activation loop comprises a polypeptide sequence shown as SEQ ID NO: 20.
Preferably an endogenous activation loop comprises a polypeptide sequence having at least 70% (e.g. at least 80% or 90%) sequence identity to SEQ ID NO: 21. In one embodiment an endogenous activation loop comprises a polypeptide sequence having at least 95% sequence identity to SEQ ID NO: 21. More preferably, an endogenous activation loop comprises a polypeptide sequence shown as SEQ ID NO: 21.
Preferably an endogenous activation loop comprises a polypeptide sequence having at least 70% (e.g. at least 80% or 90%) sequence identity to SEQ ID NO: 24. In one embodiment an endogenous activation loop comprises a polypeptide sequence having at least 95% sequence identity to SEQ ID NO: 24. More preferably, an endogenous activation loop comprises a polypeptide sequence shown as SEQ ID NO: 24.
The present invention encompasses methods and clostridial neurotoxins in which an endogenous activation loop has been replaced by an exogenous activation loop, such as an exogenous activation loop comprising a polypeptide shown as Cys-(Xaa)a-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys (SEQ ID NO: 1). Xaa or Yaa can be any amino acid. The number of amino acids at position Xaa and Yaa are indicated by the letters ‘a’ and ‘b’, respectively. In one embodiment ‘a’ and ‘b’ can be any integer that allows for proteolytic cleavage of the activation loop and yields an active di-chain clostridial neurotoxin. In one embodiment ‘a’ is at least 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10. In one embodiment ‘b’ is at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15. In one embodiment ‘a’ is ≤12, ≤11, ≤10, ≤9, ≤8, ≤7, ≤6, ≤5 or ≤4. In one embodiment ‘b’ is ≤20, ≤19, ≤18, ≤17, ≤16, ≤15, ≤14, ≤13, ≤12, ≤11, ≤10 or ≤9.
In one embodiment ‘a’ is 1-12, for example 1-10. Preferably ‘a’ is 1-7, such as 2-4. More preferably ‘a’ is 3. In one embodiment ‘b’ is 1-20, for example 4-15. Preferably ‘b’ is 6-10. More preferably ‘b’ is 8.
It is not intended that Xaa or Yaa be limited to only one type of amino acid. Thus, one or more residues present at position Xaa may be independently selected from the standard amino acids: aspartic acid, glutamic acid, arginine, lysine, histidine, asparagine, glutamine, serine, threonine, tyrosine, methionine, tryptophan, cysteine, alanine, glycine, valine, leucine, isoleucine, proline, and phenylalanine. One or more residues present at position Yaa may be independently selected from the standard amino acids: aspartic acid, glutamic acid, arginine, lysine, histidine, asparagine, glutamine, serine, threonine, tyrosine, methionine, tryptophan, cysteine, alanine, glycine, valine, leucine, isoleucine, proline, and phenylalanine. Preferably an amino acid at position Yaa (more preferably immediately C-terminal to the Arg residue of SEQ ID NO: 1) is not proline.
Alternatively/additionally, one or more residues present at position Xaa or Yaa may be independently selected from a non-standard amino acid (an amino acid that is not part of the standard set of 20 described above). By way of example, non-standard amino acids may include 4-hydroxyproline, 6-N-methyl lysine, 2-aminoisobutyric acid, isovaline, α-methyl serine, trans-3-methylproline, 2,4-methano-proline, cis-4-hydroxyproline, trans-4-hydroxy-proline, N-methylglycine, allo-threonine, methyl-threonine, hydroxy-ethylcysteine, hydroxyethylhomo-cysteine, nitro-glutamine, homoglutamine, pipecolic acid, tert-leucine, norvaline, 2-azaphenylalanine, 3-azaphenyl-alanine, 4-azaphenyl-alanine, L-Ornithine, L-2-amino-3-guanidinopropionic acid, or D-isomers of Lysine, Arginine and/or Ornithine, and 4-fluorophenylalanine. Methods for introducing non-standard amino acids into proteins are known in the art, and include recombinant protein synthesis using E. coli auxotrophic expression hosts.
Properties of the standard amino acids are indicated in the table below:














AMINO ACID
SIDE CHAIN





















Aspartic acid
Asp
D
Charged (acidic)



Glutamic acid
Glu
E
Charged (acidic)



Arginine
Arg
R
Charged (basic)



Lysine
Lys
K
Charged (basic)



Histidine
His
H
Uncharged (polar)



Asparagine
Asn
N
Uncharged (polar)



Glutamine
Gln
Q
Uncharged (polar)



Serine
Ser
S
Uncharged (polar)



Threonine
Thr
T
Uncharged (polar)



Tyrosine
Tyr
Y
Uncharged (polar)



Methionine
Met
M
Uncharged (polar)



Tryptophan
Trp
W
Uncharged (polar)



Cysteine
Cys
C
Uncharged (polar)



Alanine
Ala
A
Uncharged (hydrophobic)



Glycine
Gly
G
Uncharged (hydrophobic)



Valine
Val
V
Uncharged (hydrophobic)



Leucine
Leu
L
Uncharged (hydrophobic)



Isoleucine
Ile
I
Uncharged (hydrophobic)



Proline
Pro
P
Uncharged (hydrophobic)



Phenylalanine
Phe
F
Uncharged (hydrophobic)










The following amino acids are considered charged amino acids: aspartic acid (negative), glutamic acid (negative), arginine (positive), and lysine (positive).
The sequence Ile-Asp/Glu-Gly-Arg (SEQ ID NO: 82) comprised in SEQ ID NO: 1 refers to the site surprisingly found by the present inventors to be recognised by enterokinase (as well as factor Xa). Preferably the sequence is Ile-Asp-Gly-Arg (SEQ ID NO: 18), e.g. Cys-(Xaa)a-Ile-Asp-Gly-Arg-(Yaa)b-Cys (SEQ ID NO: 83). It is believed that enterokinase and factor Xa hydrolyse a peptide bond immediately C-terminal to Arg of SEQ ID NO: 1 (i.e. the peptide bond between Arg and Yaa).
In one embodiment an amino acid residue at Xaa immediately N-terminal to lie of SEQ ID NO: 1 is an uncharged hydrophobic amino acid, preferably alanine. In some embodiments ‘a’ is at least 2, and Xaa comprises at least a C-terminal uncharged polar amino acid and a charged basic amino acid immediately N-terminal thereto. The charged basic amino acid is preferably lysine. Thus in embodiments where ‘a’ is at least 2, Xaa may comprise at least Lys-Ala, wherein Ala is immediately N-terminal to lie of SEQ ID NO: 1.
In one embodiment Xaa comprises or consists of the sequence HKA.
In one embodiment an amino acid residue at Yaa immediately C-terminal to Arg of SEQ ID NO: 1 is an uncharged polar amino acid, preferably serine. In some embodiments ‘b’ is at least 2, and Yaa comprises at least an N-terminal uncharged polar amino acid and an uncharged hydrophobic amino acid immediately C-terminal thereto. The uncharged hydrophobic amino acid is preferably leucine. Thus in embodiments where ‘b’ is at least 2, Yaa may comprise at least Ser-Leu, wherein Ser is immediately C-terminal to Arg of SEQ ID NO: 1.
In one embodiment Yaa comprises or consists of the sequence SLYNKTLDC (SEQ ID NO: 84).
In some embodiments an exogenous activation loop has at least 70% sequence identity to SEQ ID NO: 2. In one embodiment an exogenous activation loop has at least 80%, 85% or 90% sequence identity to SEQ ID NO: 2. Preferably an exogenous activation loop has at least 95% sequence identity to SEQ ID NO: 2. More preferably, an exogenous activation loop has at least 99% sequence identity to SEQ ID NO: 2.
In a particularly preferred embodiment an exogenous loop comprises SEQ ID NO: 2. More preferably an exogenous loop consists of SEQ ID NO: 2.
The exogenous loop may also be a variant of SEQ ID NO: 2, such as SEQ ID NO:3 or a sequence having at least 70% sequence identity thereto. SEQ ID NO: 3 is a variant of SEQ ID NO: 2 in which the enterokinase recognition site IDGR (SEQ ID NO: 18) has been mutated to IEGR. In one embodiment an exogenous activation loop has at least 80%, 85% or 90% sequence identity to SEQ ID NO: 3. Preferably an exogenous activation loop has at least 95% sequence identity to SEQ ID NO: 3. More preferably, an exogenous activation loop has at least 99% sequence identity to SEQ ID NO: 3
In a particularly preferred embodiment an exogenous loop comprises SEQ ID NO: 3. More preferably an exogenous loop consists of SEQ ID NO: 3.
A clostridial neurotoxin of the present invention (e.g. engineered clostridial neurotoxin) may be encoded by a nucleotide sequence having at least 70% sequence identity to SEQ ID NO: 4, SEQ ID NO: 6, SEQ ID NO: 8, SEQ ID NO: 10 or SEQ ID NO: 12. In one embodiment a clostridial neurotoxin of the present invention may be encoded by a nucleotide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 4, SEQ ID NO: 6, SEQ ID NO: 8, SEQ ID NO: 10 or SEQ ID NO: 12. Preferably, a clostridial neurotoxin of the present invention may be encoded by a nucleotide sequence comprising (more preferably consisting of) SEQ ID NO: 4, SEQ ID NO: 6, SEQ ID NO: 8, SEQ ID NO: 10 or SEQ ID NO: 12.
A clostridial neurotoxin of the present invention (e.g. engineered clostridial neurotoxin) may comprise a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 9, SEQ ID NO: 11 or SEQ ID NO: 13. In one embodiment a clostridial neurotoxin of the present invention may comprise a polypeptide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 9, SEQ ID NO: 11 or SEQ ID NO: 13. Preferably, a clostridial neurotoxin of the present invention may comprise (more preferably consist of) a polypeptide sequence shown as SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 9, SEQ ID NO: 11 or SEQ ID NO: 13.
The clostridial neurotoxin of the present invention (e.g. engineered clostridial neurotoxin) is preferably BoNT/X, wherein the clostridial neurotoxin is encoded by a nucleotide sequence having at least 70% sequence identity to SEQ ID NO: 4. In one embodiment the clostridial neurotoxin is encoded by a nucleotide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 4. Preferably the clostridial neurotoxin is encoded by a nucleotide sequence comprising (or consisting of) SEQ ID NO: 4. The clostridial neurotoxin of the present invention is preferably BoNT/X, wherein the clostridial neurotoxin comprises a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 5. In one embodiment the clostridial neurotoxin comprises a polypeptide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 5. Preferably the clostridial neurotoxin comprises (or consists of) a polypeptide sequence shown as SEQ ID NO: 5.
The clostridial neurotoxin of the present invention (e.g. engineered clostridial neurotoxin) is preferably BoNT/E, wherein the clostridial neurotoxin is encoded by a nucleotide sequence having at least 70% sequence identity to SEQ ID NO: 10. In one embodiment the clostridial neurotoxin is encoded by a nucleotide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 10. Preferably the clostridial neurotoxin is encoded by a nucleotide sequence comprising (or consisting of) SEQ ID NO: 10. The clostridial neurotoxin of the present invention is preferably BoNT/E, wherein the clostridial neurotoxin comprises a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 11. In one embodiment the clostridial neurotoxin comprises a polypeptide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 11. Preferably the clostridial neurotoxin comprises (or consists of) a polypeptide sequence shown as SEQ ID NO: 11.
In some embodiments, the polypeptide sequences of the invention (or the nucleotide sequences encoding the same) may include a purification tag, such as a His-tag. It is intended that the present invention also encompasses polypeptide sequences (and nucleotide sequences encoding the same) where the purification tag is removed.
The present invention encompasses contacting a single-chain clostridial neurotoxin (e.g. an engineered clostridial neurotoxin of the invention) with a protease capable of hydrolysing a peptide bond in an activation loop of the single-chain clostridial neurotoxin thereby producing a di-chain clostridial neurotoxin. The protease may be an endopeptidase. The protease may be enterokinase, factor Xa, Lys-C or trypsin. Preferably the protease is enterokinase or factor Xa, more preferably enterokinase.
The term “enterokinase” or “EK” encompasses enterokinases described herein, as well as any protease having structural and/or functional similarity (preferably structural and functional similarity) that is capable of hydrolysing a peptide bond of SEQ ID NO: 1. A suitable enterokinase is enterokinase light chain, which is commercially available from NEB (#P8070). One unit may be defined as the amount of enzyme required to cleave 25 μg of a MBP-EK-paramyosin-ΔSal substrate to 95% completion in 16 hours at 25° C. in a total reaction volume of 25 μl (20 mM Tris-HCl, 50 mM NaCl, 2 mM CaCl2 (pH 8.0 @ 25° C.)).
In one embodiment an enterokinase comprises a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 49. In some embodiments an enterokinase comprises a polypeptide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 49. Preferably an enterokinase comprises (more preferably consists of) SEQ ID NO: 49.
In some embodiments, enterokinase may further comprise a heavy chain, wherein the heavy and light-chains are connected by a disulphide bridge. Such enterokinases are commercially available (e.g. from R&D Systems).
The term “factor Xa” encompasses factor Xa described herein, as well as any protease having structural and/or functional similarity (preferably structural and functional similarity) that is capable of hydrolysing a peptide bond of SEQ ID NO: 1. A suitable factor Xa is commercially available from NEB (#P8010). One unit may be defined as the amount of factor Xa required to cleave 50 μg of an MBP fusion protein test substrate, MBP-ΔSal (substrate MBP-ΔSal is maltose-binding protein fused to a truncated form of paramyosin, with the amino acids 11e-Glu-Gly-Arg at the fusion joint) to 95% completion in 6 hours or less at 23° C. in a reaction volume of 50 μl (20 mM Tris-HCl, 100 mM NaCl, 2 mM CaCl2 (pH 8.0)).
In one embodiment a factor Xa comprises a polypeptide sequence having a heavy chain with at least 70% sequence identity to SEQ ID NO: 50 and a light chain with at least 70% sequence identity to SEQ ID NO: 51, wherein the heavy and light-chain are connected by a disulphide bridge. In some embodiments a factor Xa comprises a polypeptide sequence having a heavy chain with at least 80% or 90% sequence identity to SEQ ID NO: 50 and a light chain with at least 80% or 90% sequence identity to SEQ ID NO: 51, wherein the heavy and light-chain are connected by a disulphide bridge. Preferably a factor Xa comprises (more preferably consists of) SEQ ID NO: 50 and SEQ ID NO: 51, wherein the heavy and light-chain are connected by a disulphide bridge.
The contacting can occur under any suitable conditions that result in the production of greater than 30%, 40%, 50% or 60% (preferably greater than 70%) of single-chain clostridial neurotoxin being proteolytically processed into the corresponding di-chain clostridial neurotoxin without, or without substantial, hydrolysis of a peptide bond outside of the activation loop of said clostridial neurotoxin. “Without substantial hydrolysis” may mean less than 5%, 4%, 3%, 2% or 1% of the clostridial neurotoxins contacted contain a peptide bond outside of the activation loop that has been hydrolysed by a protease in a method of the invention.
The skilled person can select appropriate reaction times, temperatures, buffers, and molar ratios of protease to single-chain clostridial neurotoxin to achieve the above. Optimisation of such conditions can be determined empirically using routine techniques, such as SDS-PAGE (e.g. stained with Coomassie or a dye of similar sensitivity) visual analysis of the reaction products following said contacting or spectrometric techniques (e.g. mass spectrometry).
When assessed by SDS-PAGE (e.g. stained with Coomassie or a dye of similar sensitivity), a method of the invention preferably results in the production of a clostridial neurotoxin L-chain and H-chain only.
In one embodiment the proteolytic processing by a protease in a method of the invention results in the production of less than 5 degradation products of a clostridial neurotoxin L-chain or H-chain, more preferably less than 4, 3, 2 or 1 degradation products. Preferably, the L-chain and H-chain produced by a method of the invention are full-length L-chain and H-chain.
Therefore, in a particularly preferred embodiment a protease used in a method of the invention (e.g. enterokinase or factor Xa) hydrolyses only a peptide bond of SEQ ID NO: 1, more preferably only the peptide bond between Arg and Yaa of SEQ ID NO: 1.
In one embodiment the contacting occurs for at least 1 hour, e.g. at least 2, 4, 6, 8, 10, 12, 14, 16, 18 or 20 hours.
In one embodiment the contacting occurs at a temperature of at least 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39 or 40° C.
In one embodiment contacting occurs at a temperature of 1 to 10° C. (preferably about 4° C.).
Preferably contacting occurs at a temperature of 1 to 10° C. (more preferably about 4° C.) for 10-25 hours (preferably 15-20 hours).
In one embodiment contacting occurs at a temperature of 15-25° C. (preferably about 20° C.). Preferably contacting occurs at a temperature of 15-25° C. (more preferably about 20° C.) for 10-25 hours (preferably 15-20 hours).
In one embodiment contacting occurs at a temperature of 20-30° C. (preferably about 25° C.). Preferably contacting occurs at a temperature of 20-30° C. (more preferably about 25° C.) for 10-25 hours (preferably 15-20 hours).
A contacting step of a method of the invention may comprise the use of at least 1 μg of protease per mg of clostridial neurotoxin. In one embodiment a contacting step of a method of the invention comprises the use of at least 0.1, 0.2, 0.4, 0.5, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15 or 20 μg of protease per mg of clostridial neurotoxin. Preferably a contacting step of a method of the invention comprises the use of at least 2 μg (more preferably at least 4 μg) of protease per mg of clostridial neurotoxin.
In one embodiment a contacting step of a method of the invention comprises the use of ≤20 μg of protease per mg of clostridial neurotoxin. In one embodiment a contacting step of a method of the invention comprises the use of ≤15 μg of protease per mg of clostridial neurotoxin. Preferably a contacting step of a method of the invention comprises the use of ≤10 μg of protease per mg of clostridial neurotoxin. More preferably, a contacting step of a method of the invention comprises the use of ≤7 μg of protease per mg of clostridial neurotoxin A contacting step of a method of the invention may comprise the use of 0.1-20 μg of protease per mg of clostridial neurotoxin. In one embodiment a method of the invention may comprise the use of 1-10 μg of protease per mg of clostridial neurotoxin, preferably 4-7 μg of protease per mg of clostridial neurotoxin.
A contacting step of a method of the invention may comprise the use of at least 10, 20, 30, 40, 50, 60 or 70 units of enterokinase per mg of clostridial neurotoxin. Preferably, a contacting step of a method of the invention may comprise the use of at least 60 units of enterokinase (more preferably at least 70 units) per mg of clostridial neurotoxin. In some embodiments, a contacting step of a method of the invention may comprise the use of ≤150, ≤140, ≤130, ≤120, ≤110, ≤100, ≤90 units of enterokinase per mg of clostridial neurotoxin. Preferably, a contacting step of a method of the invention may comprise the use of ≤100 units of enterokinase (more preferably ≤90 units) per mg of clostridial neurotoxin. A contacting step of a method of the invention may comprise the use of 50-110 units of enterokinase per mg of clostridial neurotoxin. In one embodiment a method of the invention may comprise the use of 70-90 units of enterokinase per mg of clostridial neurotoxin, e.g. about 80 units of enterokinase per mg of clostridial neurotoxin.
A contacting step of a method of the invention may comprise the use of at least 0.5, 1, 2, 3, 4, or 5 units of factor Xa per mg of clostridial neurotoxin. Preferably, a contacting step of a method of the invention may comprise the use of at least 3 units of factor Xa (more preferably at least 4 units) per mg of clostridial neurotoxin. In some embodiments, a contacting step of a method of the invention may comprise the use of ≤15, ≤14, ≤13, ≤12, ≤11, ≤10, ≤9, ≤8 or ≤7 units of factor Xa per mg of clostridial neurotoxin. Preferably, a contacting step of a method of the invention may comprise the use of ≤8 units of factor Xa (more preferably ≤7 units) per mg of clostridial neurotoxin. A contacting step of a method of the invention may comprise the use of 0.5-15 units of factor Xa per mg of clostridial neurotoxin. In one embodiment a method of the invention may comprise the use of 1-10 units (preferably 4-7 units) of factor Xa per mg of clostridial neurotoxin, e.g. about 5 or 6 units of factor Xa per mg of clostridial neurotoxin.
A contacting step of a method of the invention may comprise the use of at least 0.02, 0.04, 0.06 or 0.08 units of Lys-C per mg of clostridial neurotoxin. Preferably, a contacting step of a method of the invention may comprise the use of at least 0.04 units of Lys-C per mg of clostridial neurotoxin. In some embodiments, a contacting step of a method of the invention may comprise the use of ≤0.5, ≤0.4 or ≤0.2 units of Lys-C per mg of clostridial neurotoxin. Preferably, a contacting step of a method of the invention may comprise the use of ≤0.2 units of Lys-C per mg of clostridial neurotoxin. A contacting step of a method of the invention may comprise the use of 0.02-0.5 units of Lys-C per mg of clostridial neurotoxin. Preferably, a method of the invention may comprise the use of 0.04-0.2 units of Lys-C per mg of clostridial neurotoxin.
A contacting step of a method of the invention may comprise the use of at least 0.1, 0.2, 0.3 or 0.4 units of trypsin per mg of clostridial neurotoxin. Preferably, a contacting step of a method of the invention may comprise the use of at least 0.4 units of trypsin per mg of clostridial neurotoxin. In some embodiments, a contacting step of a method of the invention may comprise the use of ≤2.5, ≤2.3, ≤2.1, ≤1.9 units of trypsin per mg of clostridial neurotoxin. Preferably, a contacting step of a method of the invention may comprise the use of ≤1.8 units of trypsin per mg of clostridial neurotoxin. A contacting step of a method of the invention may comprise the use of 0.1-2.5 units of trypsin per mg of clostridial neurotoxin. Preferably, a method of the invention may comprise the use of 0.3-2 units (more preferably 0.4-1.8 units) of trypsin per mg of clostridial neurotoxin.
In one embodiment the clostridial neurotoxin (e.g. pre-engineering) may be BoNT/X. A reference BoNT/X sequence is shown as SEQ ID NO: 33. A histidine-tagged version of BoNT/X is presented as SEQ ID NO: 34. A reference nucleotide sequence encoding BoNT/X is shown as SEQ ID NO: 32.
In one embodiment the clostridial neurotoxin (e.g. pre-engineering) may be BoNT/A. A reference BoNT/A sequence is shown as SEQ ID NO: 35.
In another embodiment the clostridial neurotoxin (e.g. pre-engineering) may be BoNT/B. A reference BoNT/B sequence is shown as SEQ ID NO: 36.
In another embodiment the clostridial neurotoxin (e.g. pre-engineering) may be BoNT/C. A reference BoNT/C1 sequence is shown as SEQ ID NO: 37.
In another embodiment the clostridial neurotoxin (e.g. pre-engineering) may be BoNT/D. A reference BoNT/D sequence is shown as SEQ ID NO: 38.
In another embodiment the clostridial neurotoxin (e.g. pre-engineering) may be BoNT/E. A reference BoNT/E sequence is shown as SEQ ID NO: 39.
In another embodiment the clostridial neurotoxin (e.g. pre-engineering) may be BoNT/F. A reference BoNT/F sequence is shown as SEQ ID NO: 40.
In another embodiment the clostridial neurotoxin (e.g. pre-engineering) may be BoNT/G. A reference BoNT/G sequence is shown as SEQ ID NO: 41.
In another embodiment the clostridial neurotoxin (e.g. pre-engineering) may be TeNT. A reference TeNT sequence is shown as SEQ ID NO: 42.
As discussed above, clostridial neurotoxins are formed from two polypeptide chains, the heavy chain (H-chain), which has a molecular mass of approximately 100 kDa, and the light chain (L-chain), which has a molecular mass of approximately 50 kDa. The H-chain comprises a C-terminal targeting component (receptor binding domain or HC domain) and an N-terminal translocation component (HN domain).
Examples of light chain reference sequences include:

    
    
        Botulinum type A neurotoxin: amino acid residues 1-448
        Botulinum type B neurotoxin: amino acid residues 1-440
        Botulinum type C1 neurotoxin: amino acid residues 1-441
        Botulinum type D neurotoxin: amino acid residues 1-445
        Botulinum type E neurotoxin: amino acid residues 1-422
        Botulinum type F neurotoxin: amino acid residues 1-439
        Botulinum type G neurotoxin: amino acid residues 1-441
        Tetanus neurotoxin: amino acid residues 1-457
    
    


For recently-identified BoNT/X, the L-chain has been reported as corresponding to amino acids 1-439 thereof, with the L-chain boundary potentially varying by approximately 25 amino acids (e.g. 1-414 or 1-464).
The above-identified reference sequences should be considered a guide, as slight variations may occur according to sub-serotypes. By way of example, US 2007/0166332 (hereby incorporated by reference in its entirety) cites slightly different clostridial sequences:

    
    
        Botulinum type A neurotoxin: amino acid residues M1-K448
        Botulinum type B neurotoxin: amino acid residues M1-K441
        Botulinum type C1 neurotoxin: amino acid residues M1-K449
        Botulinum type D neurotoxin: amino acid residues M1-R445
        Botulinum type E neurotoxin: amino acid residues M1-R422
        Botulinum type F neurotoxin: amino acid residues M1-K439
        Botulinum type G neurotoxin: amino acid residues M1-K446
        Tetanus neurotoxin: amino acid residues M1-A457
    
    


A Translocation Domain is a molecule that enables translocation of a protease into a target cell such that a functional expression of protease activity occurs within the cytosol of the target cell. Whether any molecule (e.g. a protein or peptide) possesses the requisite translocation function of the present invention may be confirmed by any one of a number of conventional assays.
For example, Shone C. (1987) describes an in vitro assay employing liposomes, which are challenged with a test molecule. Presence of the requisite translocation function is confirmed by release from the liposomes of K+ and/or labelled NAD, which may be readily monitored [see Shone C. (1987) Eur. J. Biochem; vol. 167(1): pp. 175-180].
A further example is provided by Blaustein R. (1987), which describes a simple in vitro assay employing planar phospholipid bilayer membranes. The membranes are challenged with a test molecule and the requisite translocation function is confirmed by an increase in conductance across said membranes [see Blaustein (1987) FEBS Letts; vol. 226, no. 1: pp. 115-120].
Additional methodology to enable assessment of membrane fusion and thus identification of Translocation Domains suitable for use in the present invention are provided by Methods in Enzymology Vol 220 and 221, Membrane Fusion Techniques, Parts A and B, Academic Press 1993.
The present invention also embraces variant translocation domains, so long as the variant domains still demonstrate the requisite translocation activity. By way of example, a variant may have at least 70%, preferably at least 80%, more preferably at least 90%, and most preferably at least 95% or at least 98% amino acid sequence homology with a reference translocation domain. The term fragment, when used in relation to a translocation domain, means a peptide having at least 20, preferably at least 40, more preferably at least 80, and most preferably at least 100 amino acid residues of the reference translocation domain. In the case of a clostridial translocation domain, the fragment preferably has at least 100, preferably at least 150, more preferably at least 200, and most preferably at least 250 amino acid residues of the reference translocation domain (eg. HN domain). Translocation ‘fragments’ of the present invention embrace fragments of variant translocation domains based on the reference sequences.
The Translocation Domain is preferably capable of formation of ion-permeable pores in lipid membranes under conditions of low pH. Preferably it has been found to use only those portions of the protein molecule capable of pore-formation within the endosomal membrane.
The Translocation Domain may be obtained from a microbial protein source, in particular from a bacterial or viral protein source. Hence, in one embodiment, the Translocation Domain is a translocating domain of an enzyme, such as a bacterial toxin or viral protein.
It is well documented that certain domains of bacterial toxin molecules are capable of forming such pores. It is also known that certain translocation domains of virally expressed membrane fusion proteins are capable of forming such pores. Such domains may be employed in the present invention.
The Translocation Domain may be of a clostridial origin, such as the HN domain (or a functional component thereof). HN means a portion or fragment of the H-chain of a clostridial neurotoxin approximately equivalent to the amino-terminal half of the H-chain, or the domain corresponding to that fragment in the intact H-chain. In one embodiment the HC function of the H-chain may be removed by deletion of the HC amino acid sequence (either at the DNA synthesis level, or at the post-synthesis level by nuclease or protease treatment). Alternatively, the HC function may be inactivated by chemical or biological treatment. Thus, in some embodiments the H-chain may be incapable of binding to the Binding Site on a target cell to which native clostridial neurotoxin (i.e. holotoxin) binds.
Examples of suitable (reference) Translocation Domains include:

    
    
        Botulinum type A neurotoxin—amino acid residues (449-871)
        Botulinum type B neurotoxin—amino acid residues (441-858)
        Botulinum type C neurotoxin—amino acid residues (442-866)
        Botulinum type D neurotoxin—amino acid residues (446-862)
        Botulinum type E neurotoxin—amino acid residues (423-845)
        Botulinum type F neurotoxin—amino acid residues (440-864)
        Botulinum type G neurotoxin—amino acid residues (442-863)
        Tetanus neurotoxin—amino acid residues (458-879)
    
    


The above-identified reference sequence should be considered a guide as slight variations may occur according to sub-serotypes. By way of example, US 2007/0166332 (hereby incorporated by reference thereto) cites slightly different clostridial sequences:

    
    
        Botulinum type A neurotoxin—amino acid residues (A449-K871)
        Botulinum type B neurotoxin—amino acid residues (A442-S858)
        Botulinum type C neurotoxin—amino acid residues (T450-N866)
        Botulinum type D neurotoxin—amino acid residues (D446-N862)
        Botulinum type E neurotoxin—amino acid residues (K423-K845)
        Botulinum type F neurotoxin—amino acid residues (A440-K864)
        Botulinum type G neurotoxin—amino acid residues (S447-S863)
        Tetanus neurotoxin—amino acid residues (S458-V879)
    
    


In the context of the present invention, a variety of clostridial neurotoxin HN regions comprising a translocation domain can be useful in aspects of the present invention with the proviso that these active fragments can facilitate the release of a non-cytotoxic protease (e.g. a clostridial L-chain) from intracellular vesicles into the cytoplasm of the target cell and thus participate in executing the overall cellular mechanism whereby a clostridial neurotoxin proteolytically cleaves a substrate. The HN regions from the heavy chains of clostridial neurotoxins are approximately 410-430 amino acids in length and comprise a translocation domain. Research has shown that the entire length of a HN region from a clostridial neurotoxin heavy chain is not necessary for the translocating activity of the translocation domain. Thus, aspects of this embodiment can include clostridial neurotoxin HN regions comprising a translocation domain having a length of, for example, at least 350 amino acids, at least 375 amino acids, at least 400 amino acids and at least 425 amino acids. Other aspects of this embodiment can include clostridial neurotoxin HN regions comprising translocation domain having a length of, for example, at most 350 amino acids, at most 375 amino acids, at most 400 amino acids and at most 425 amino acids.
For further details on the genetic basis of toxin production in Clostridium botulinum and C. tetani, we refer to Henderson et al (1997) in The Clostridia: Molecular Biology and Pathogenesis, Academic press.
The term HN embraces naturally-occurring neurotoxin HN portions, and modified HN portions having amino acid sequences that do not occur in nature and/or synthetic amino acid residues, so long as the modified HN portions still demonstrate the above-mentioned translocation function.
Alternatively, the Translocation Domain may be of a non-clostridial origin. Examples of non-clostridial (reference) Translocation Domain origins include, but not be restricted to, the translocation domain of diphtheria toxin [O'Keefe et al., Proc. Natl. Acad. Sci. USA (1992) 89, 6202-6206; Silverman et al., J. Biol. Chem. (1993) 269, 22524-22532; and London, E. (1992) Biochem. Biophys. Acta., 1112, pp. 25-51], the translocation domain of Pseudomonas exotoxin type A [Prior et al. Biochemistry (1992) 31, 3555-3559], the translocation domains of anthrax toxin [Blanke et al. Proc. Natl. Acad. Sci. USA (1996) 93, 8437-8442], a variety of fusogenic or hydrophobic peptides of translocating function [Plank et al. J. Biol. Chem. (1994) 269, 12918-12924; and Wagner et al (1992) PNAS, 89, pp. 7934-7938], and amphiphilic peptides [Murata et al (1992) Biochem., 31, pp. 1986-1992]. The Translocation Domain may mirror the Translocation Domain present in a naturally-occurring protein, or may include amino acid variations so long as the variations do not destroy the translocating ability of the Translocation Domain.
Particular examples of viral (reference) Translocation Domains suitable for use in the present invention include certain translocating domains of virally expressed membrane fusion proteins. For example, Wagner et al. (1992) and Murata et al. (1992) describe the translocation (i.e. membrane fusion and vesiculation) function of a number of fusogenic and amphiphilic peptides derived from the N-terminal region of influenza virus haemagglutinin. Other virally expressed membrane fusion proteins known to have the desired translocating activity are a translocating domain of a fusogenic peptide of Semliki Forest Virus (SFV), a translocating domain of vesicular stomatitis virus (VSV) glycoprotein G, a translocating domain of SER virus F protein and a translocating domain of Foamy virus envelope glycoprotein. Virally encoded Aspike proteins have particular application in the context of the present invention, for example, the E1 protein of SFV and the G protein of the G protein of VSV.
Use of the (reference) Translocation Domains listed in Table (below) includes use of sequence variants thereof. A variant may comprise one or more conservative nucleic acid substitutions and/or nucleic acid deletions or insertions, with the proviso that the variant possesses the requisite translocating function. A variant may also comprise one or more amino acid substitutions and/or amino acid deletions or insertions, so long as the variant possesses the requisite translocating function.












Translocation




Domain source
Amino acid residues
References







Diphtheria toxin
194-380
Silverman et al., 1994, J. Biol. Chem.




269, 22524-22532




London E., 1992, Biochem. Biophys.




Acta., 1113, 25-51


Domain II of
405-613
Prior et al., 1992, Biochemistry 31, 3555-3559


pseudomonas

Kihara & Pastan, 1994, Bioconj Chem. 5,


exotoxin

532-538


Influenza virus
GLFGAIAGFIENGWE
Plank et al., 1994, J. Biol. Chem. 269,


haemagglutinin
GMIDGWYG (SEQ ID
12918-12924



NO: 73), and
Wagner et al., 1992, PNAS, 89, 7934-7938



Variants thereof
Murata et al., 1992, Biochemistry 31, 1986-1992


Semliki Forest virus
Translocation domain
Kielian et al., 1996, J Cell Biol. 134(4),


fusogenic protein

863-872


Vesicular Stomatitis
118-139
Yao et al., 2003, Virology 310(2), 319-332


virus glycoprotein G


SER virus F protein
Translocation domain
Seth et al., 2003, J Virol 77(11) 6520-6527


Foamy virus
Translocation domain
Picard-Maureau et al., 2003, J Virol.


envelope

77(8), 4722-4730


glycoprotein









Examples of clostridial neurotoxin HC domain reference sequences include:

    
    
        BoNT/A—N872-1L1296
        BoNT/B—E859-E1291
        BoNT/C1—N867-E1291
        BoNT/D—S863-E1276
        BoNT/E—R846-K1252
        BoNT/F—K865-E1274
        BoNT/G—N864-E1297
        TeNT—I880-D1315
    
    


For recently-identified BoNT/X, the HC domain has been reported as corresponding to amino acids 893-1306 thereof, with the domain boundary potentially varying by approximately 25 amino acids (e.g. 868-1306 or 918-1306).
The clostridial neurotoxins described herein may further comprise a translocation facilitating domain. Said domain facilitates delivery of the non-cytotoxic protease into the cytosol of the target cell and are described, for example, in WO 08/008803 and WO 08/008805, each of which is herein incorporated by reference thereto.
By way of example, suitable translocation facilitating domains include an enveloped virus fusogenic peptide domain, for example, suitable fusogenic peptide domains include influenzavirus fusogenic peptide domain (eg. influenza A virus fusogenic peptide domain of 23 amino acids), alphavirus fusogenic peptide domain (eg. Semliki Forest virus fusogenic peptide domain of 26 amino acids), vesiculovirus fusogenic peptide domain (eg. vesicular stomatitis virus fusogenic peptide domain of 21 amino acids), respirovirus fusogenic peptide domain (eg. Sendai virus fusogenic peptide domain of 25 amino acids), morbiliivirus fusogenic peptide domain (eg. Canine distemper virus fusogenic peptide domain of 25 amino acids), avulavirus fusogenic peptide domain (eg. Newcastle disease virus fusogenic peptide domain of 25 amino acids), henipavirus fusogenic peptide domain (eg. Hendra virus fusogenic peptide domain of 25 amino acids), metapneumovirus fusogenic peptide domain (eg. Human metapneumovirus fusogenic peptide domain of 25 amino acids) or spumavirus fusogenic peptide domain such as simian foamy virus fusogenic peptide domain; or fragments or variants thereof.
By way of further example, a translocation facilitating domain may comprise a clostridial neurotoxin HCN domain or a fragment or variant thereof. In more detail, a clostridial neurotoxin HCN translocation facilitating domain may have a length of at least 200 amino acids, at least 225 amino acids, at least 250 amino acids, at least 275 amino acids. In this regard, a clostridial neurotoxin HCN translocation facilitating domain preferably has a length of at most 200 amino acids, at most 225 amino acids, at most 250 amino acids, or at most 275 amino acids. Specific (reference) examples include:

    
    
        Botulinum type A neurotoxin—amino acid residues (872-1110)
        Botulinum type B neurotoxin—amino acid residues (859-1097)
        Botulinum type C neurotoxin—amino acid residues (867-1111)
        Botulinum type D neurotoxin—amino acid residues (863-1098)
        Botulinum type E neurotoxin—amino acid residues (846-1085)
        Botulinum type F neurotoxin—amino acid residues (865-1105)
        Botulinum type G neurotoxin—amino acid residues (864-1105)
        Tetanus neurotoxin—amino acid residues (880-1127)
    
    


The above sequence positions may vary a little according to serotype/sub-type, and further examples of suitable (reference) clostridial neurotoxin HCN domains include:

    
    
        Botulinum type A neurotoxin—amino acid residues (874-1110)
        Botulinum type B neurotoxin—amino acid residues (861-1097)
        Botulinum type C neurotoxin—amino acid residues (869-1111)
        Botulinum type D neurotoxin—amino acid residues (865-1098)
        Botulinum type E neurotoxin—amino acid residues (848-1085)
        Botulinum type F neurotoxin—amino acid residues (867-1105)
        Botulinum type G neurotoxin—amino acid residues (866-1105)
        Tetanus neurotoxin—amino acid residues (882-1127)
    
    


Any of the above-described facilitating domains may be combined with any of the previously described translocation domain peptides that are suitable for use in the present invention. Thus, by way of example, a non-clostridial facilitating domain may be combined with non-clostridial translocation domain peptide or with clostridial translocation domain peptide. Alternatively, a clostridial neurotoxin HCN translocation facilitating domain may be combined with a non-clostridial translocation domain peptide. Alternatively, a clostridial neurotoxin HCN facilitating domain may be combined or with a clostridial translocation domain peptide, examples of which include:

    
    
        Botulinum type A neurotoxin—amino acid residues (449-1110)
        Botulinum type B neurotoxin—amino acid residues (442-1097)
        Botulinum type C neurotoxin—amino acid residues (450-1111)
        Botulinum type D neurotoxin—amino acid residues (446-1098)
        Botulinum type E neurotoxin—amino acid residues (423-1085)
        Botulinum type F neurotoxin—amino acid residues (440-1105)
        Botulinum type G neurotoxin—amino acid residues (447-1105)
        Tetanus neurotoxin—amino acid residues (458-1127)
    
    


In some embodiments the clostridial neurotoxins of the present invention may lack a functional HC domain of a clostridial neurotoxin. Accordingly, said clostridial neurotoxins are not able to bind rat synaptosomal membranes (via a clostridial HC component) in binding assays as described in Shone et al. (1985) Eur. J. Biochem. 151, 75-82. In one embodiment, the clostridial neurotoxins preferably lack the last 50 C-terminal amino acids of a clostridial neurotoxin holotoxin. In another embodiment, the clostridial neurotoxins preferably lack the last 100, preferably the last 150, more preferably the last 200, particularly preferably the last 250, and most preferably the last 300 C-terminal amino acid residues of a clostridial neurotoxin holotoxin. Alternatively, the HC binding activity may be negated/reduced by mutagenesis—by way of example, referring to BoNT/A for convenience, modification of one or two amino acid residue mutations (W1266 to L and Y1267 to F) in the ganglioside binding pocket causes the HC region to lose its receptor binding function. Analogous mutations may be made to non-serotype A clostridial peptide components, e.g. a construct based on botulinum B with mutations (W1262 to L and Y1263 to F) or botulinum E (W1224 to L and Y1225 to F). Other mutations to the active site achieve the same ablation of HC receptor binding activity, e.g. Y1267S in botulinum type A toxin and the corresponding highly conserved residue in the other clostridial neurotoxins. Details of this and other mutations are described in Rummel et al (2004) (Molecular Microbiol. 51:631-634), which is hereby incorporated by reference thereto.
The HC peptide of a native clostridial neurotoxin comprises approximately 400-440 amino acid residues, and consists of two functionally distinct domains of approximately 25 kDa each, namely the N-terminal region (commonly referred to as the HCN peptide or domain) and the C-terminal region (commonly referred to as the Hoc peptide or domain). This fact is confirmed by the following publications, each of which is herein incorporated in its entirety by reference thereto: Umland TC (1997) Nat. Struct. Biol. 4: 788-792; Herreros J (2000) Biochem. J. 347: 199-204; Halpern J (1993) J. Biol. Chem. 268: 15, pp. 11188-11192; Rummel A (2007) PNAS 104: 359-364; Lacey DB (1998) Nat. Struct. Biol. 5: 898-902; Knapp (1998) Am. Cryst. Assoc. Abstract Papers 25: 90; Swaminathan and Eswaramoorthy (2000) Nat. Struct. Biol. 7: 1751-1759; and Rummel A (2004) Mol. Microbiol. 51(3), 631-643. Moreover, it has been well documented that the C-terminal region (HCC), which constitutes the C-terminal 160-200 amino acid residues, is responsible for binding of a clostridial neurotoxin to its natural cell receptors, namely to nerve terminals at the neuromuscular junction—this fact is also confirmed by the above publications. Thus, reference throughout this specification to a clostridial heavy-chain lacking a functional heavy chain HC peptide (or domain) such that the heavy-chain is incapable of binding to cell surface receptors to which a native clostridial neurotoxin binds means that the clostridial heavy-chain simply lacks a functional Hoc peptide. In other words, the Hoc peptide region may be either partially or wholly deleted, or otherwise modified (e.g. through conventional chemical or proteolytic treatment) to inactivate its native binding ability for nerve terminals at the neuromuscular junction.
Thus, in one embodiment, a clostridial neurotoxin HN peptide of the present invention lacks part of a C-terminal peptide portion (HCC) of a clostridial neurotoxin and thus lacks the HC binding function of native clostridial neurotoxin. By way of example, in one embodiment, the C-terminally extended clostridial HN peptide lacks the C-terminal 40 amino acid residues, or the C-terminal 60 amino acid residues, or the C-terminal 80 amino acid residues, or the C-terminal 100 amino acid residues, or the C-terminal 120 amino acid residues, or the C-terminal 140 amino acid residues, or the C-terminal 150 amino acid residues, or the C-terminal 160 amino acid residues of a clostridial neurotoxin heavy-chain. In another embodiment, the clostridial HN peptide of the present invention lacks the entire C-terminal peptide portion (HCC) of a clostridial neurotoxin and thus lacks the HC binding function of native clostridial neurotoxin. By way of example, in one embodiment, the clostridial HN peptide lacks the C-terminal 165 amino acid residues, or the C-terminal 170 amino acid residues, or the C-terminal 175 amino acid residues, or the C-terminal 180 amino acid residues, or the C-terminal 185 amino acid residues, or the C-terminal 190 amino acid residues, or the C-terminal 195 amino acid residues of a clostridial neurotoxin heavy-chain. By way of further example, the clostridial HN peptide of the present invention lacks a clostridial HCC reference sequence selected from the group consisting of:

    
    
        Botulinum type A neurotoxin—amino acid residues (Y1111-L1296)
        Botulinum type B neurotoxin—amino acid residues (Y1098-E1291)
        Botulinum type C neurotoxin—amino acid residues (Y1112-E1291)
        Botulinum type D neurotoxin—amino acid residues (Y1099-E1276)
        Botulinum type E neurotoxin—amino acid residues (Y1086-K1252)
        Botulinum type F neurotoxin—amino acid residues (Y1106-E1274)
        Botulinum type G neurotoxin—amino acid residues (Y1106-E1297)
        Tetanus neurotoxin—amino acid residues (Y1128-D1315).
    
    


The above-identified reference sequences should be considered a guide as slight variations may occur according to sub-serotypes.
The present invention is suitable for application to many different varieties of clostridial neurotoxin. Thus, in the context of the present invention, the term “clostridial neurotoxin” embraces toxins produced by C. botulinum (botulinum neurotoxin serotypes A, B, C1, D, E, F, G, H, and X), C. tetani (tetanus neurotoxin), C. butyricum (botulinum neurotoxin serotype E), and C. baratii (botulinum neurotoxin serotype F), as well as modified clostridial neurotoxins or derivatives derived from any of the foregoing. The term “clostridial neurotoxin” also embraces botulinum neurotoxin serotype H. Preferably the clostridial neurotoxin is not BoNT/C1.
Botulinum neurotoxin (BoNT) is produced by C. botulinum in the form of a large protein complex, consisting of BoNT itself complexed to a number of accessory proteins. There are at present nine different classes of botulinum neurotoxin, namely: botulinum neurotoxin serotypes A, B, C1, D, E, F, G, H, and X all of which share similar structures and modes of action. Different BoNT serotypes can be distinguished based on inactivation by specific neutralising anti-sera, with such classification by serotype correlating with percentage sequence identity at the amino acid level. BoNT proteins of a given serotype are further divided into different subtypes on the basis of amino acid percentage sequence identity.
BoNTs are absorbed in the gastrointestinal tract, and, after entering the general circulation, bind to the presynaptic membrane of cholinergic nerve terminals and prevent the release of their neurotransmitter acetylcholine. BoNT/B, BoNT/D, BoNT/F and BoNT/G cleave synaptobrevin/vesicle-associated membrane protein (VAMP); BoNT/C1, BoNT/A and BoNT/E cleave the synaptosomal-associated protein of 25 kDa (SNAP-25); and BoNT/C1 cleaves syntaxin. BoNT/X has been found to cleave SNAP-25, VAMP1, VAMP2, VAMP3, VAMP4, VAMP5, Ykt6, and syntaxin 1.
Tetanus toxin is produced in a single serotype by C. tetani. C. butyricum produces BoNT/E, while C. baratii produces BoNT/F.
The term “clostridial neurotoxin” is also intended to embrace modified clostridial neurotoxins and derivatives thereof, including but not limited to those described below. A modified clostridial neurotoxin or derivative may contain one or more amino acids that has been modified as compared to the native (unmodified) form of the clostridial neurotoxin, or may contain one or more inserted amino acids that are not present in the native (unmodified) form of the clostridial neurotoxin. By way of example, a modified clostridial neurotoxin may have modified amino acid sequences in one or more domains relative to the native (unmodified) clostridial neurotoxin sequence. Such modifications may modify functional aspects of the toxin, for example biological activity or persistence. Thus, in one embodiment, the engineered clostridial neurotoxin of the invention is an engineered modified clostridial neurotoxin, or an engineered modified clostridial neurotoxin derivative, or an engineered clostridial neurotoxin derivative.
A modified clostridial neurotoxin may have one or more modifications in the amino acid sequence of the heavy chain (such as a modified HC domain), wherein said modified heavy chain binds to target nerve cells with a higher or lower affinity than the native (unmodified) clostridial neurotoxin. Such modifications in the HC domain can include modifying residues in the ganglioside binding site of the HC domain or in the protein (SV2 or synaptotagmin) binding site that alter binding to the ganglioside receptor and/or the protein receptor of the target nerve cell. Examples of such modified clostridial neurotoxins are described in WO 2006/027207 and WO 2006/114308, both of which are hereby incorporated by reference in their entirety.
A modified clostridial neurotoxin may have one or more modifications in the amino acid sequence of the light chain, for example modifications in the substrate binding or catalytic domain which may alter or modify the SNARE protein specificity of the modified L-chain. Examples of such modified clostridial neurotoxins are described in WO 2010/120766 and US 2011/0318385, both of which are hereby incorporated by reference in their entirety.
A modified clostridial neurotoxin may comprise one or more modifications that increases or decreases the biological activity and/or the biological persistence of the modified clostridial neurotoxin. For example, a modified clostridial neurotoxin may comprise a leucine- or tyrosine-based motif, wherein said motif increases or decreases the biological activity and/or the biological persistence of the modified clostridial neurotoxin. Suitable leucine-based motifs include xDxxxLL (SEQ ID NO: 74), xExxxLL (SEQ ID NO: 75), xExxxIL (SEQ ID NO: 76), and xExxxLM (SEQ ID NO: 77) (wherein x is any amino acid). Suitable tyrosine-based motifs include Y-x-x-Hy (SEQ ID NO: 78) (wherein Hy is a hydrophobic amino acid). Examples of modified clostridial neurotoxins comprising leucine- and tyrosine-based motifs are described in WO 2002/08268, which is hereby incorporated by reference in its entirety.
The term “clostridial neurotoxin” is intended to embrace hybrid and chimeric clostridial neurotoxins. A hybrid clostridial neurotoxin comprises at least a portion of a light chain from one clostridial neurotoxin or subtype thereof, and at least a portion of a heavy chain from another clostridial neurotoxin or clostridial neurotoxin subtype. In one embodiment the hybrid clostridial neurotoxin may contain the entire light chain from one clostridial neurotoxin subtype and the heavy chain from another clostridial neurotoxin subtype. In another embodiment, a chimeric clostridial neurotoxin may contain a portion (e.g. the binding domain) of the heavy chain of one clostridial neurotoxin subtype, with another portion of the heavy chain being from another clostridial neurotoxin subtype. Similarly or alternatively, the therapeutic element may comprise light chain portions from different clostridial neurotoxins. Such hybrid or chimeric clostridial neurotoxins are useful, for example, as a means of delivering the therapeutic benefits of such clostridial neurotoxins to patients who are immunologically resistant to a given clostridial neurotoxin subtype, to patients who may have a lower than average concentration of receptors to a given clostridial neurotoxin heavy chain binding domain, or to patients who may have a protease-resistant variant of the membrane or vesicle toxin substrate (e.g., SNAP-25, VAMP and syntaxin). Hybrid and chimeric clostridial neurotoxins are described in U.S. Pat. No. 8,071,110, which publication is hereby incorporated by reference in its entirety. Thus, in one embodiment, the engineered clostridial neurotoxin of the invention is an engineered hybrid clostridial neurotoxin, or an engineered chimeric clostridial neurotoxin.
In a particularly preferred embodiment, a clostridial neurotoxin is BoNT/X comprising at least one domain from a non-BoNT/X clostridial neurotoxin (e.g. a BoNT/X hybrid or chimera).
For example, in one embodiment a clostridial neurotoxin of the invention (comprising an exogenous activation loop) may comprise:

    
    
        i. A BoNT/X L-chain and a non-BoNT/X HN and HC domain;
        ii. A BoNT/X HN domain and a non-BoNT/X L-chain and HC domain
        iii. A BoNT/X HC domain and a non-BoNT/X L-chain and HN domain;
        iv. A BoNT/X L-chain and HN domain and a non-BoNT/X HC domain
        v. A BoNT/X L-chain and HC domain and a non-BoNT/X HN domain; or
        vi. A BoNT/X HN domain and HC domain and a non-BoNT/X L-chain.
    
    


In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/X L-chain and HN domain and a BoNT/A HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain is encoded by a nucleotide sequence comprising at least 70% sequence identity to SEQ ID NO: 6. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain is encoded by a nucleotide sequence comprising at least 80% or 90% sequence identity to SEQ ID NO: 6. Preferably an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain is encoded by a nucleotide sequence comprising (more preferably consisting of) SEQ ID NO: 6. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain comprises a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 7. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain comprises a polypeptide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 7. Preferably an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain comprises (more preferably consists of) a polypeptide sequence shown as SEQ ID NO: 7.
In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/X L-chain and HN domain and a BoNT/B HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain is encoded by a nucleotide sequence comprising at least 70% sequence identity to SEQ ID NO: 8. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain is encoded by a nucleotide sequence comprising at least 80% or 90% sequence identity to SEQ ID NO: 8. Preferably an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain is encoded by a nucleotide sequence comprising (more preferably consisting of) SEQ ID NO: 8. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain comprises a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 9. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain comprises a polypeptide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 9. Preferably an engineered clostridial neurotoxin of the invention comprising a BoNT/X L-chain and HN domain and a BoNT/A HC domain comprises (more preferably consists of) a polypeptide sequence shown as SEQ ID NO: 9.
In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/X L-chain and HN domain and a BoNT/C HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/X L-chain and HN domain and a BoNT/D HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/X L-chain and HN domain and a BoNT/E HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/X L-chain and HN domain and a BoNT/F HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/X L-chain and HN domain and a BoNT/G HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/X L-chain and HN domain and a TeNT HC domain.
In one embodiment, a clostridial neurotoxin is BoNT/A comprising at least one domain from a non-BoNT/A clostridial neurotoxin.
For example, in one embodiment a clostridial neurotoxin of the invention (comprising an exogenous activation loop) may comprise:

    
    
        i. A BoNT/A L-chain and a non-BoNT/A HN and HC domain;
        ii. A BoNT/A HN domain and a non-BoNT/A L-chain and HC domain
        iii. A BoNT/A HC domain and a non-BoNT/A L-chain and HN domain;
        iv. A BoNT/A L-chain and HN domain and a non-BoNT/A HC domain
        v. A BoNT/A L-chain and HC domain and a non-BoNT/A HN domain; or
        vi. A BoNT/A HN domain and HC domain and a non-BoNT/A L-chain.
    
    


In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/A L-chain and HN domain and a BoNT/C1 HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/A L-chain and HN domain and a BoNT/C1 HC domain is encoded by a nucleotide sequence comprising at least 70% sequence identity to SEQ ID NO: 12. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/A L-chain and HN domain and a BoNT/C1 He domain is encoded by a nucleotide sequence comprising at least 80% or 90% sequence identity to SEQ ID NO: 12. Preferably an engineered clostridial neurotoxin of the invention comprising a BoNT/A L-chain and HN domain and a BoNT/C1 HC domain is encoded by a nucleotide sequence comprising (more preferably consisting of) SEQ ID NO: 12. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/A L-chain and HN domain and a BoNT/C1 HC domain comprises a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 13. In one embodiment an engineered clostridial neurotoxin of the invention comprising a BoNT/A L-chain and HN domain and a BoNT/C1 HC domain comprises a polypeptide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 13. Preferably an engineered clostridial neurotoxin of the invention comprising a BoNT/A L-chain and HN domain and a BoNT/C1 HC domain comprises (more preferably consists of) a polypeptide sequence shown as SEQ ID NO: 13.
In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/A L-chain and HN domain and a BoNT/B HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/A L-chain and HN domain and a BoNT/D HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/A L-chain and HN domain and a BoNT/E HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/A L-chain and HN domain and a BoNT/F HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/A L-chain and HN domain and a BoNT/G HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/A L-chain and HN domain and a BoNT/X HC domain. In one embodiment an engineered clostridial neurotoxin of the invention comprises a BoNT/A L-chain and HN domain and a TeNT HC domain.
For example, in one embodiment a clostridial neurotoxin of the invention (comprising an exogenous activation loop) may comprise:

    
    
        i. A BoNT/B L-chain and a non-BoNT/B HN and HC domain;
        ii. A BoNT/B HN domain and a non-BoNT/B L-chain and HC domain
        iii. A BoNT/B HC domain and a non-BoNT/B L-chain and HN domain;
        iv. A BoNT/B L-chain and HN domain and a non-BoNT/B HC domain
        v. A BoNT/B L-chain and HC domain and a non-BoNT/B HN domain; or
        vi. A BoNT/B HN domain and HC domain and a non-BoNT/B L-chain.
    
    


For example, in one embodiment a clostridial neurotoxin of the invention (comprising an exogenous activation loop) may comprise:

    
    
        i. A BoNT/D L-chain and a non-BoNT/XD HN and HC domain;
        ii. A BoNT/D HN domain and a non-BoNT/D L-chain and HC domain
        iii. A BoNT/D HC domain and a non-BoNT/D L-chain and HN domain;
        iv. A BoNT/D L-chain and HN domain and a non-BoNT/D HC domain
        v. A BoNT/D L-chain and HC domain and a non-BoNT/D HN domain; or
        vi. A BoNT/D HN domain and HC domain and a non-BoNT/D L-chain.
    
    


For example, in one embodiment a clostridial neurotoxin of the invention (comprising an exogenous activation loop) may comprise:

    
    
        i. A BoNT/E L-chain and a non-BoNT/E HN and HC domain;
        ii. A BoNT/E HN domain and a non-BoNT/E L-chain and HC domain
        iii. A BoNT/E HC domain and a non-BoNT/E L-chain and HN domain;
        iv. A BoNT/E L-chain and HN domain and a non-BoNT/E HC domain
        v. A BoNT/E L-chain and HC domain and a non-BoNT/E HN domain; or
        vi. A BoNT/E HN domain and HC domain and a non-BoNT/E L-chain.
    
    


For example, in one embodiment a clostridial neurotoxin of the invention (comprising an exogenous activation loop) may comprise:

    
    
        i. A BoNT/F L-chain and a non-BoNT/F HN and HC domain;
        ii. A BoNT/F HN domain and a non-BoNT/F L-chain and HC domain
        iii. A BoNT/F HC domain and a non-BoNT/F L-chain and HN domain;
        iv. A BoNT/F L-chain and HN domain and a non-BoNT/F HC domain
        v. A BoNT/F L-chain and HC domain and a non-BoNT/F HN domain; or
        vi. A BoNT/F HN domain and HC domain and a non-BoNT/F L-chain.
    
    


For example, in one embodiment a clostridial neurotoxin of the invention (comprising an exogenous activation loop) may comprise:

    
    
        i. A BoNT/G L-chain and a non-BoNT/G HN and HC domain;
        ii. A BoNT/G HN domain and a non-BoNT/G L-chain and HC domain
        iii. A BoNT/G HC domain and a non-BoNT/G L-chain and HN domain;
        iv. A BoNT/G L-chain and HN domain and a non-BoNT/G HC domain
        v. A BoNT/G L-chain and HC domain and a non-BoNT/G HN domain; or
        vi. A BoNT/G HN domain and HC domain and a non-BoNT/G L-chain.
    
    


For example, in one embodiment a clostridial neurotoxin of the invention (comprising an exogenous activation loop) may comprise:

    
    
        i. A TeNT L-chain and a non-TeNT HN and HC domain;
        ii. A TeNT HN domain and a non-TeNT L-chain and HC domain
        iii. A TeNT HC domain and a non-TeNT L-chain and HN domain;
        iv. A TeNT L-chain and HN domain and a non-TeNT HC domain
        v. A TeNT L-chain and HC domain and a non-TeNT HN domain; or
        vi. A TeNT HN domain and HC domain and a non-TeNT L-chain.
    
    


The term “clostridial neurotoxin” may also embrace newly discovered botulinum neurotoxin protein family members expressed by non-clostridial microorganisms, such as the Enterococcus encoded toxin which has closest sequence identity to BoNT/X, the Weissella oryzae encoded toxin called BoNT/Wo (NCBI Ref Seq: WP_027699549.1), which cleaves VAMP2 at W89-W90, the Enterococcus faecium encoded toxin (GenBank: OT022244.1), which cleaves VAMP2 and SNAP25, and the Chryseobacterium pipero encoded toxin (NCBI Ref.Seq: WP_034687872.1).
The term “clostridial neurotoxin” is intended to embrace re-targeted clostridial neurotoxins. In a re-targeted clostridial neurotoxin, the clostridial neurotoxin is modified to include an exogenous ligand known as a Targeting Moiety (TM). The TM is selected to provide binding specificity for a desired target cell, and as part of the re-targeting process the native binding portion of the clostridial neurotoxin (e.g. the HC domain, or the Hoc domain) may be removed. Re-targeting technology is described, for example, in: EP-B-0689459; WO 1994/021300; EP-B-0939818; U.S. Pat. Nos. 6,461,617; 7,192,596; WO 1998/007864; EP-B-0826051; U.S. Pat. Nos. 5,989,545; 6,395,513; 6,962,703; WO 1996/033273; EP-B-0996468; U.S. Pat. No. 7,052,702; WO 1999/017806; EP-B-1107794; U.S. Pat. No. 6,632,440; WO 2000/010598; WO 2001/21213; WO 2006/059093; WO 2000/62814; WO 2000/04926; WO 1993/15766; WO 2000/61192; and WO 1999/58571; all of which are hereby incorporated by reference in their entirety. Thus, in one embodiment, the engineered clostridial neurotoxin of the invention is an engineered re-targeted clostridial neurotoxin. The engineered clostridial neurotoxin of the present invention may lack a functional HC domain of a clostridial neurotoxin and also lack any functionally equivalent TM. Accordingly, said polypeptides lack the natural binding function of a clostridial neurotoxin and are not able to bind rat synaptosomal membranes (via a clostridial He component, or via any functionally equivalent TM) in binding assays as described in Shone et al. (1985) Eur. J. Biochem. 151, 75-82. In one embodiment, the TM is preferably not a Wheat Germ Agglutinin (WGA) peptide.
In one embodiment an engineered clostridial neurotoxin of the invention may comprise an engineered LHN polypeptide described herein.
In one embodiment an engineered clostridial neurotoxin may comprise an engineered LHN polypeptide described herein and a targeting moiety (TM).
Reference engineered LHN polypeptide sequences are presented herein as SEQ ID NOs: 53-60, however the engineered LHN polypeptide sequence may have at least 70% sequence identity to any of SEQ ID NOs: 53-60. In one embodiment the engineered LHN polypeptide sequence may have at least 80% or 90% sequence identity to any of SEQ ID NOs: 53-60. Preferably the engineered LHN polypeptide sequence comprises (more preferably consists of) any of SEQ ID NOs: 53-60.
In one embodiment a TM may comprise anthrax toxin protective antigen (PA) or a fragment thereof. A reference sequence for PA is shown as SEQ ID NO: 52. In some embodiments PA comprises a polypeptide sequence having at least 70% sequence identity to SEQ ID NO: 52 or a fragment thereof. In some embodiments PA comprises a polypeptide sequence having at least 80% or 90% sequence identity to SEQ ID NO: 52 or a fragment thereof. In other embodiments PA comprises (or consists of) a polypeptide sequence shown as SEQ ID NO: 52 or a fragment thereof.
Thus, in one embodiment an engineered clostridial neurotoxin of the present invention may comprise: a clostridial neurotoxin non-cytotoxic protease domain, a clostridial neurotoxin translocation domain (e.g. LHN of a clostridial neurotoxin), and a TM comprising PA or a fragment thereof. Said engineered clostridial neurotoxin comprises an exogenous activation loop comprising polypeptide sequence Cys-(Xaa)a-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys (SEQ ID NO: 1).
Thus, in one embodiment, an engineered clostridial neurotoxin comprises PA or a fragment thereof and LHN/A, LHN/B, LHN/D, LHN/E, LHN/F, LHN/G, LHN/X or LHN/TeNT, wherein the endogenous clostridial neurotoxin activation loop has been replaced with an exogenous activation loop comprising polypeptide sequence Cys-(Xaa)a-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys (SEQ ID NO: 1).
Lys-C is not suitable for use with conventional clostridial neurotoxins comprising LHN and a PA TM, as Lys-C hydrolses one or more peptide bonds outside of the endogenous activation loop of said clostridial neurotoxin, for example it has been found that Lys-C hydrolyses one or more peptide bonds in the PA TM.
Thus, in some embodiments, an engineered clostridial neurotoxin comprises PA (or a fragment thereof) and:

    
    
        i. Amino acid residues 1-871 of SEQ ID NO: 35
        ii. Amino acid residues 1-858 of SEQ ID NO: 36
        iii. Amino acid residues 1-862 of SEQ ID NO: 38
        iv. Amino acid residues 1-845 of SEQ ID NO: 39
        v. Amino acid residues 1-864 of SEQ ID NO: 40
        vi. Amino acid residues 1-863 of SEQ ID NO: 41
        vii. Amino acid residues 1-879 of SEQ ID NO: 42 or
        viii. Amino acid residues 1-924 of SEQ ID NO: 33;
    
    


wherein the endogenous clostridial neurotoxin activation loop has been replaced with an exogenous activation loop comprising polypeptide sequence Cys-(Xaa)a-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys (SEQ ID NO: 1).
In one embodiment an engineered clostridial neurotoxin has a polypeptide sequence with at least 70% sequence identity to a polypeptide comprising:

    
    
        a. SEQ ID NO: 52; and
        b. SEQ ID NO: 53, SEQ ID NO: 54, SEQ ID NO: 55, SEQ ID NO: 56, SEQ ID NO: 57, SEQ ID NO: 58, SEQ ID NO: 59 or SEQ ID NO: 60.
    
    


In one embodiment an engineered clostridial neurotoxin has a polypeptide sequence with at least 80% or 90% sequence identity to a polypeptide comprising:

    
    
        a. SEQ ID NO: 52; and
        b. SEQ ID NO: 53, SEQ ID NO: 54, SEQ ID NO: 55, SEQ ID NO: 56, SEQ ID NO: 57, SEQ ID NO: 58, SEQ ID NO: 59 or SEQ ID NO: 60.
    
    


Preferably an engineered clostridial neurotoxin has a polypeptide sequence comprising:

    
    
        a. SEQ ID NO: 52; and
        b. SEQ ID NO: 53, SEQ ID NO: 54, SEQ ID NO: 55, SEQ ID NO: 56, SEQ ID NO: 57, SEQ ID NO: 58, SEQ ID NO: 59 or SEQ ID NO: 60.
    
    


In one embodiment an engineered clostridial neurotoxin has a polypeptide sequence with at least 70% sequence identity to a polypeptide comprising:

    
    
        a. a fragment of SEQ ID NO: 52; and
        b. SEQ ID NO: 53, SEQ ID NO: 54, SEQ ID NO: 55, SEQ ID NO: 56, SEQ ID NO: 57, SEQ ID NO: 58, SEQ ID NO: 59 or SEQ ID NO: 60.
    
    


In one embodiment an engineered clostridial neurotoxin has a polypeptide sequence with at least 80% or 90% sequence identity to a polypeptide comprising:

    
    
        a. a fragment of SEQ ID NO: 52; and
        b. SEQ ID NO: 53, SEQ ID NO: 54, SEQ ID NO: 55, SEQ ID NO: 56, SEQ ID NO: 57, SEQ ID NO: 58, SEQ ID NO: 59 or SEQ ID NO: 60.
    
    


Preferably an engineered clostridial neurotoxin has a polypeptide sequence comprising:

    
    
        a. a fragment of SEQ ID NO: 52; and
        b. SEQ ID NO: 53, SEQ ID NO: 54, SEQ ID NO: 55, SEQ ID NO: 56, SEQ ID NO: 57, SEQ ID NO: 58, SEQ ID NO: 59 or SEQ ID NO: 60.
    
    


In one embodiment a PA fragment may be PAd1, which is located at residues 1-258 of SEQ ID NO: 52. In one embodiment a PA fragment may be PAd2, which is located at residues 259-487 of SEQ ID NO: 52. In one embodiment a PA fragment may be PAd3, which is located at residues 488-594 of SEQ ID NO: 52. In one embodiment a PA fragment may be PAd4, which is located at residues 595-735 of SEQ ID NO: 52. In other embodiments a PA fragment may contain any combination of PAd1, PAd2, PAd3 or PAd4.
Full-length 83 kDa PA (PA83) may be proteolytically processed by a furin or other furin-like protease thus removing an N-terminal fragment (PA20). The 63 kDa processed form, known as PA63 is an oligomerisable form of PA.
In one embodiment the PA fragment may comprise (or consist of) one or more of PA63, PAd3-d4, PAd2-d4, and PAd4.
In one embodiment the PA fragment may be a C-terminal receptor-binding domain of PA or a PA fragment (or variant) thereof that retains binding activity to ANTXR2 or a nociceptor neuron binding protein.
The present invention also embraces clostridial neurotoxins that have a non-native protease cleavage site. In such clostridial neurotoxins, the native protease cleavage site (also known as the activation site, as described above) is modified or replaced with a protease cleavage site that is not native to that clostridial neurotoxin (i.e. an exogenous cleavage site). Such a site will require an exogenous protease for cleavage, which allows for improved control over the timing and location of cleavage events. Non-native protease cleavage sites that may be employed in clostridial neurotoxins include:









TEV (Tobacco Etch virus)



(SEQ ID NO: 79)



(ENLYFQ↓G)



 



Thrombin



(SEQ ID NO: 80)



(LVPR↓GS)



 



PreScission



(SEQ ID NO: 81)



(LEVLFQ↓GP).






Additional protease cleavage sites include recognition sequences that are cleaved by a non-cytotoxic protease, for example by the light chain of a clostridial neurotoxin. These include the SNARE (e.g. SNAP-25, syntaxin, VAMP) protein recognition sequences that are cleaved by non-cytotoxic proteases such as the light chain of a clostridial neurotoxin. Clostridial neurotoxins comprising non-native protease cleavage sites are described in U.S. Pat. No. 7,132,259, EP 1206554-B2 and US 2007/0166332, all of which are hereby incorporated by reference in their entirety. Also embraced by the term protease cleavage site is an intein, which is a self-cleaving sequence. The self-splicing reaction is controllable, for example by varying the concentration of reducing agent present.
The present invention also embraces clostridial neurotoxins comprising a “destructive cleavage site”. In said clostridial neurotoxins, a non-native protease cleavage site is incorporated into the clostridial neurotoxin, at a location chosen such that cleavage at said site will decrease the activity of, or inactivate, the clostridial neurotoxin. The destructive protease cleavage site can be susceptible to cleavage by a local protease, in the event that the clostridial neurotoxin, following administration, migrates to a non-target location. Suitable non-native protease cleavage sites include those described above. Clostridial neurotoxins comprising a destructive cleavage site are described in WO 2010/094905 and WO 2002/044199, both of which are hereby incorporated by reference in their entirety.
The engineered clostridial neurotoxins of the present invention, especially the light chain component thereof, may be PEGylated—this may help to increase stability, for example duration of action of the light chain component. PEGylation is particularly preferred when the light chain comprises a BoNT/A, B or C1 protease. PEGylation preferably includes the addition of PEG to the N-terminus of the light chain component. By way of example, the N-terminus of a light chain may be extended with one or more amino acid (e.g. cysteine) residues, which may be the same or different. One or more of said amino acid residues may have its own PEG molecule attached (e.g. covalently attached) thereto. An example of this technology is described in WO2007/104567, which is hereby incorporated by reference in its entirety.
The engineered clostridial neurotoxins of the present invention may be free from the complexing proteins that are present in a naturally occurring clostridial neurotoxin complex.
The engineered clostridial neurotoxins of the present invention can be produced using recombinant nucleic acid technologies. Thus, in one embodiment, an engineered clostridial neurotoxin (as described above) is a recombinant engineered clostridial neurotoxin.
In another aspect, the present invention provides a nucleic acid (for example, a DNA) comprising a nucleic acid sequence encoding an engineered clostridial neurotoxin as described above. In one embodiment, the nucleic acid sequence is prepared as part of a DNA vector comprising a promoter and a terminator.
In a preferred embodiment, the vector has a promoter selected from:












Promoter
Induction Agent
Typical Induction Condition


















Tac (hybrid)
IPTG
0.2 mM
(0.05-2.0 mM)


AraBAD
L-arabinose
0.2%
(0.002-0.4%)


T7-lac operator
IPTG
0.2 mM
(0.05-2.0 mM)









In another preferred embodiment, the vector has a promoter selected from:












Promoter
Induction Agent
Typical Induction Condition


















Tac (hybrid)
IPTG
0.2 mM
(0.05-2.0 mM)


AraBAD
L-arabinose
0.2%
(0.002-0.4%)


T7-lac operator
IPTG
0.2 mM
(0.05-2.0 mM)


T5-lac operator
IPTG
0.2 mM
(0.05-2.0 mM)









The nucleic acid molecules of the invention may be made using any suitable process known in the art. Thus, the nucleic acid molecules may be made using chemical synthesis techniques. Alternatively, the nucleic acid molecules of the invention may be made using molecular biology techniques.
The DNA construct of the present invention is preferably designed in silico, and then synthesised by conventional DNA synthesis techniques.
The above-mentioned nucleic acid sequence information is optionally modified for codon-biasing according to the ultimate host cell (e.g. E. coli) expression system that is to be employed.
In one aspect the present invention provides a nucleotide sequence encoding an engineered clostridial neurotoxin of the present invention. The nucleotide sequence comprises a sequence having at least 70% sequence identity to SEQ ID NO: 4, SEQ ID NO: 6, SEQ ID NO: 8, SEQ ID NO: 10 or SEQ ID NO: 12. In one embodiment the nucleotide sequence comprises a sequence having at least 80% or 90% sequence identity to SEQ ID NO: 4, SEQ ID NO: 6, SEQ ID NO: 8, SEQ ID NO: 10 or SEQ ID NO: 12. Preferably the nucleotide sequence comprises (more preferably consists of) SEQ ID NO: 4, SEQ ID NO: 6, SEQ ID NO: 8, SEQ ID NO: 10 or SEQ ID NO: 12.
The nucleotide sequence of the invention encodes a polypeptide comprising SEQ ID NO: 1.
The terms “nucleotide sequence” and “nucleic acid” are used synonymously herein. Preferably the nucleotide sequence is a DNA sequence.
The invention provides a method of producing a single-chain (engineered) clostridial neurotoxin protein having a light chain and a heavy chain, the method comprising expressing a nucleic acid described herein in a suitable host cell, lysing the host cell to provide a host cell homogenate containing the single-chain (engineered) clostridial neurotoxin protein, and isolating the single-chain (engineered) clostridial neurotoxin protein. In one aspect, the present invention provides a method for proteolytically processing an (engineered) clostridial neurotoxin of the present invention into a corresponding di-chain clostridial neurotoxin, the method comprising contacting the (engineered) clostridial neurotoxin with a protease (preferably an endopeptidase, such as enterokinase or factor Xa) thereby producing a di-chain clostridial neurotoxin (e.g. wherein the light chain and heavy chain are joined together by a disulphide bond).
The present invention therefore provides a di-chain clostridial neurotoxin obtainable by a method of the invention.
The term “obtainable” as used herein also encompasses the term “obtained”. In one embodiment the term “obtainable” means obtained.
A clostridial neurotoxin of the present invention suitably finds utility in medicine or in cosmetics. In use, the clostridial neurotoxin is preferably in a di-chain form.
The (engineered) clostridial neurotoxins of the invention may be used to prevent or treat certain medical or cosmetic diseases and conditions. Thus, in a further aspect, the present invention provides an (engineered) clostridial neurotoxin as described above, for use in medicine.
In a related aspect, the present invention provides an (engineered) clostridial neurotoxin as described above, for use in the prevention or treatment of a disease or condition selected from: a condition associated with unwanted immune secretion, strabismus, blepharospasm, squint, dystonia (e.g. spasmodic dystonia, oromandibular dystonia, focal dystonia, tardive dystonia, laryngeal dystonia, limb dystonia, cervical dystonia), torticollis (e.g. spasmodic torticollis), beauty therapy (cosmetic) applications benefiting from cell/muscle incapacitation (via SNARE down-regulation or inactivation), neuromuscular disorder or condition of ocular motility (e.g. concomitant strabismus, vertical strabismus, lateral rectus palsy, nystagmus, dysthyroid myopathy), writer's cramp, blepharospasm, bruxism, Wilson's disease, tremor, tics, segmental myoclonus, spasms, spasticity due to chronic multiple sclerosis, spasticity resulting in abnormal bladder control, animus, back spasm, charley horse, tension headaches, levator pelvic syndrome, spina bifida, tardive dyskinesia, Parkinson's disease, stuttering, hemifacial spasm, eyelid disorder, cerebral palsy, focal spasticity, spasmodic colitis, neurogenic bladder, anismus, limb spasticity, tics, tremors, bruxism, anal fissure, achalasia, dysphagia, lacrimation, hyperhydrosis, excessive salivation, excessive gastrointestinal secretions, muscle pain (e.g. pain from muscle spasms), headache pain (e.g. tension headache), brow furrows, skin wrinkles, cancer, uterine disorders, uro-genital disorders, urogenital-neurological disorders, chronic neurogenic inflammation, and a smooth muscle disorder.
Where an (engineered) clostridial neurotoxin of the invention comprises a BoNT/X sequence (or portion thereof) said clostridial neurotoxin may be able to target other types of secretory cells other than neurons, due to its ability to cleave VAMP4, VAMP5 and/or Ykt6. In some embodiments, the secretory cell targeted is a secretory immune cell. A “secretory immune cell” as used herein, refers to immune cells that secrets cytokines, chemokines, or antibodies. Such secretory immune cells may be innate immune cells including, without limitation, natural killer cells, mast cells, eosinophils, basophils, macrophages, neutrophils, and dendritic cells. Secretory immune cells that secret antibodies (e.g. white blood cells) may also be targeted by the clostridial neurotoxins of the present disclosure. Non-limiting examples of antibody secreting cells include, without limitation, plasma B cells, plasmocytes, plasmacytes, and effector B cells. In some embodiments, the clostridial neurotoxin may modulate an immune response. Thus, further contemplated herein are therapeutic use of a clostridial neurotoxin of the invention to treat a condition associated with unwanted secretion, preferably unwanted immune secretion. Conditions associated with unwanted immune secretion include, without limitation: inflammation, psoriasis, allergy, haemophagocytic lymphohistiocytosis, and alcoholic pancreatic disease.
In one aspect, the invention provides a pharmaceutical composition comprising an (engineered) clostridial neurotoxin or a di-chain clostridial neurotoxin of the invention and a pharmaceutically acceptable carrier, excipient, adjuvant, propellant and/or salt.
The (engineered) clostridial neurotoxins of the present invention may be formulated for oral, parenteral, continuous infusion, inhalation or topical application. Compositions suitable for injection may be in the form of solutions, suspensions or emulsions, or dry powders which are dissolved or suspended in a suitable vehicle prior to use.
In the case of an (engineered) clostridial neurotoxin that is to be delivered locally, the (engineered) clostridial neurotoxin may be formulated as a cream (e.g. for topical application), or for sub-dermal injection.
Local delivery means may include an aerosol, or other spray (e.g. a nebuliser). In this regard, an aerosol formulation of an (engineered) clostridial neurotoxin enables delivery to the lungs and/or other nasal and/or bronchial or airway passages. (Engineered) clostridial neurotoxins of the invention may be administered to a patient by intrathecal or epidural injection in the spinal column at the level of the spinal segment involved in the innervation of an affected organ.
A preferred route of administration is via laproscopic and/or localised, particularly intramuscular, injection.
The dosage ranges for administration of the (engineered) clostridial neurotoxins of the present invention are those to produce the desired therapeutic effect. It will be appreciated that the dosage range required depends on the precise nature of the (engineered) clostridial neurotoxin or composition, the route of administration, the nature of the formulation, the age of the patient, the nature, extent or severity of the patient's condition, contraindications, if any, and the judgement of the attending physician. Variations in these dosage levels can be adjusted using standard empirical routines for optimisation.
Suitable daily dosages (per kg weight of patient) are in the range 0.0001-1 ng/kg, preferably 0.0001-0.5 ng/kg, more preferably 0.002-0.5 ng/kg, and particularly preferably 0.004-0.5 ng/kg. The unit dosage can vary from less than 1 picogram to 30 ng, but typically will be in the region of 0.01 to 1 ng per dose, which may be administered daily or preferably less frequently, such as weekly or six monthly.
A particularly preferred dosing regimen is based on 0.05 ng of (engineered) clostridial neurotoxin as the 1× dose. In this regard, preferred dosages are in the range 1×-100× (i.e. 0.05-5 ng).
Fluid dosage forms are typically prepared utilising the (engineered) clostridial neurotoxin and a pyrogen-free sterile vehicle. The (engineered) clostridial neurotoxin, depending on the vehicle and concentration used, can be either dissolved or suspended in the vehicle. In preparing solutions the (engineered) clostridial neurotoxin can be dissolved in the vehicle, the solution being made isotonic if necessary by addition of sodium chloride and sterilised by filtration through a sterile filter using aseptic techniques before filling into suitable sterile vials or ampoules and sealing. Alternatively, if solution stability is adequate, the solution in its sealed containers may be sterilised by autoclaving. Advantageously additives such as buffering, solubilising, stabilising, preservative or bactericidal, suspending or emulsifying agents and or local anaesthetic agents may be dissolved in the vehicle.
Dry powders, which are dissolved or suspended in a suitable vehicle prior to use, may be prepared by filling pre-sterilised ingredients into a sterile container using aseptic technique in a sterile area. Alternatively the ingredients may be dissolved into suitable containers using aseptic technique in a sterile area. The product is then freeze dried and the containers are sealed aseptically.
Parenteral suspensions, suitable for intramuscular, subcutaneous or intradermal injection, are prepared in substantially the same manner, except that the sterile components are suspended in the sterile vehicle, instead of being dissolved and sterilisation cannot be accomplished by filtration. The components may be isolated in a sterile state or alternatively it may be sterilised after isolation, e.g. by gamma irradiation.
Advantageously, a suspending agent for example polyvinylpyrrolidone is included in the composition(s) to facilitate uniform distribution of the components.
Administration in accordance with the present invention may take advantage of a variety of delivery technologies including microparticle encapsulation, viral delivery systems or high-pressure aerosol impingement.
Embodiments related to the various methods of the invention are intended to be applied equally to other methods, the clostridial neurotoxins, e.g. engineered clostridial neurotoxins (whether in single-chain or di-chain forms), uses or pharmaceutical compositions, and vice versa.
Sequence Homology
Any of a variety of sequence alignment methods can be used to determine percent identity, including, without limitation, global methods, local methods and hybrid methods, such as, e.g., segment approach methods. Protocols to determine percent identity are routine procedures within the scope of one skilled in the art. Global methods align sequences from the beginning to the end of the molecule and determine the best alignment by adding up scores of individual residue pairs and by imposing gap penalties. Non-limiting methods include, e.g., CLUSTAL W, see, e.g., Julie D. Thompson et al., CLUSTAL W: Improving the Sensitivity of Progressive Multiple Sequence Alignment Through Sequence Weighting, Position-Specific Gap Penalties and Weight Matrix Choice, 22(22) Nucleic Acids Research 4673-4680 (1994); and iterative refinement, see, e.g., Osamu Gotoh, Significant Improvement in Accuracy of Multiple Protein. Sequence Alignments by Iterative Refinement as Assessed by Reference to Structural Alignments, 264(4) J. Mol. Biol. 823-838 (1996). Local methods align sequences by identifying one or more conserved motifs shared by all of the input sequences. Non-limiting methods include, e.g., Match-box, see, e.g., Eric Depiereux and Ernest Feytmans, Match-Box: A Fundamentally New Algorithm for the Simultaneous Alignment of Several Protein Sequences, 8(5) CABIOS 501-509 (1992); Gibbs sampling, see, e.g., C. E. Lawrence et al., Detecting Subtle Sequence Signals: A Gibbs Sampling Strategy for Multiple Alignment, 262(5131) Science 208-214 (1993); Align-M, see, e.g., Ivo Van Walle et al., Align-M—A New Algorithm for Multiple Alignment of Highly Divergent Sequences, 20(9) Bioinformatics: 1428-1435 (2004).
Thus, percent sequence identity is determined by conventional methods. See, for example, Altschul et al., Bull. Math. Bio. 48: 603-16, 1986 and Henikoff and Henikoff, Proc. Natl. Acad. Sci. USA 89:10915-19, 1992. Briefly, two amino acid sequences are aligned to optimize the alignment scores using a gap opening penalty of 10, a gap extension penalty of 1, and the “blosum 62” scoring matrix of Henikoff and Henikoff (ibid.) as shown below (amino acids are indicated by the standard one-letter codes).
The “percent sequence identity” between two or more nucleic acid or amino acid sequences is a function of the number of identical positions shared by the sequences. Thus, % identity may be calculated as the number of identical nucleotides/amino acids divided by the total number of nucleotides/amino acids, multiplied by 100. Calculations of % sequence identity may also take into account the number of gaps, and the length of each gap that needs to be introduced to optimize alignment of two or more sequences. Sequence comparisons and the determination of percent identity between two or more sequences can be carried out using specific mathematical algorithms, such as BLAST, which will be familiar to a skilled person.










ALIGNMENT SCORES FOR DETERMINING SEQUENCE IDENTITY




























A
R
N
D
C
Q
E
G
H
I
L
K
M
F
P
S
T
W
Y
V






























A
4





















R
−1
5




















N
−2
0
6



















D 
−2
−2
1
6


















C
0
−3
−3
−3
9

















Q
−1
1
0
0
−3
5
















E
−1
0
0
2
−4
2
5















G
0 
−2
0
−1
−3
−2
−2
6














H
−2
0
1 
−1 
−3
0
0
−2
8













I 
−1
−3
−3
−3
−1
−3 
−3 
−4 
−3
4












L 
−1 
−2 
−3
−4 
−1
−2 
−3
−4
−3
2
4











K 
−1
2 
0
−1
−3
1 
1
−2 
−1
−3
−2
5










M
−1
−1
−2
−3
−1
0
−2 
−3
−2 
1
2
−1
5









F
−2 
−3 
−3 
−3 
−2 
−3 
−3 
−3
−1 
0
0
−3
0
6








P
−1 
−2 
−2
−1
−3 
−1
−1 
−2 
−2 
−3 
−3 
−1
−2
−4
7







S
1 
−1 
1
0
−1
0
0
0
−1
−2 
−2 
0 
−1
−2
−1
4






T
0
−1 
0 
−1
−1
−1
−1
−2 
−2
−1
−1 
−1
−1
−2 
−1
1
5





W
−3 
−3
−4
−4 
−2
−2
−3 
−2 
−2
−3
−2
−3
−1 
1
−4
−3 
−2 
11




Y
−2 
−2 
−2
−3 
−2 
−1
−2 
−3 
2 
−1 
−1 
−2
−1
3 
−3
−2 
−2 
2
7



V
0 
−3 
−3 
−3 
−1 
−2 
−2 
−3
−3 
3 
1 
−2 
1
−1 
−2 
−2 
0
−3 
−1
4









The percent identity is then calculated as:
Total number of identical matches
______×100
[length of the longer sequence plus the
number of gaps introduced into the longer
sequence in order to align the two sequences]
Substantially homologous polypeptides are characterized as having one or more amino acid substitutions, deletions or additions. These changes are preferably of a minor nature, that is conservative amino acid substitutions (see below) and other substitutions that do not significantly affect the folding or activity of the polypeptide; small deletions, typically of one to about 30 amino acids; and small amino- or carboxyl-terminal extensions, such as an amino-terminal methionine residue, a small linker peptide of up to about 20-25 residues, or an affinity tag.
Conservative Amino Acid Substitutions
















Basic:
arginine




lysine




histidine



Acidic:
glutamic acid




aspartic acid



Polar:
glutamine




asparagine



Hydrophobic:
leucine




isoleucine




valine



Aromatic:
phenylalanine




tryptophan




tyrosine



Small:
glycine




alanine




serine




threonine




methionine










In addition to the 20 standard amino acids, non-standard amino acids (such as 4-hydroxyproline, 6-N-methyl lysine, 2-aminoisobutyric acid, isovaline and α-methyl serine) may be substituted for amino acid residues of the polypeptides of the present invention. A limited number of non-conservative amino acids, amino acids that are not encoded by the genetic code, and unnatural amino acids may be substituted for polypeptide amino acid residues. The polypeptides of the present invention can also comprise non-naturally occurring amino acid residues.
Non-naturally occurring amino acids include, without limitation, trans-3-methylproline, 2,4-methano-proline, cis-4-hydroxyproline, trans-4-hydroxy-proline, N-methylglycine, allo-threonine, methyl-threonine, hydroxy-ethylcysteine, hydroxyethylhomo-cysteine, nitro-glutamine, homoglutamine, pipecolic acid, tert-leucine, norvaline, 2-azaphenylalanine, 3-azaphenyl-alanine, 4-azaphenyl-alanine, and 4-fluorophenylalanine. Several methods are known in the art for incorporating non-naturally occurring amino acid residues into proteins. For example, an in vitro system can be employed wherein nonsense mutations are suppressed using chemically aminoacylated suppressor tRNAs. Methods for synthesizing amino acids and aminoacylating tRNA are known in the art. Transcription and translation of plasmids containing nonsense mutations is carried out in a cell free system comprising an E. coli S30 extract and commercially available enzymes and other reagents. Proteins are purified by chromatography. See, for example, Robertson et al., J. Am. Chem. Soc. 113:2722, 1991; Ellman et al., Methods Enzymol. 202:301, 1991; Chung et al., Science 259:806-9, 1993; and Chung et al., Proc. Natl. Acad. Sci. USA 90:10145-9, 1993). In a second method, translation is carried out in Xenopus oocytes by microinjection of mutated mRNA and chemically aminoacylated suppressor tRNAs (Turcatti et al., J. Biol. Chem. 271:19991-8, 1996). Within a third method, E. coli cells are cultured in the absence of a natural amino acid that is to be replaced (e.g., phenylalanine) and in the presence of the desired non-naturally occurring amino acid(s) (e.g., 2-azaphenylalanine, 3-azaphenylalanine, 4-azaphenylalanine, or 4-fluorophenylalanine). The non-naturally occurring amino acid is incorporated into the polypeptide in place of its natural counterpart. See, Koide et al., Biochem. 33:7470-6, 1994. Naturally occurring amino acid residues can be converted to non-naturally occurring species by in vitro chemical modification. Chemical modification can be combined with site-directed mutagenesis to further expand the range of substitutions (Wynn and Richards, Protein Sci. 2:395-403, 1993).
A limited number of non-conservative amino acids, amino acids that are not encoded by the genetic code, non-naturally occurring amino acids, and unnatural amino acids may be substituted for amino acid residues of polypeptides of the present invention.
Essential amino acids in the polypeptides of the present invention can be identified according to procedures known in the art, such as site-directed mutagenesis or alanine-scanning mutagenesis (Cunningham and Wells, Science 244: 1081-5, 1989). Sites of biological interaction can also be determined by physical analysis of structure, as determined by such techniques as nuclear magnetic resonance, crystallography, electron diffraction or photoaffinity labeling, in conjunction with mutation of putative contact site amino acids. See, for example, de Vos et al., Science 255:306-12, 1992; Smith et al., J. Mol. Biol. 224:899-904, 1992; Wlodaver et al., FEBS Lett. 309:59-64, 1992. The identities of essential amino acids can also be inferred from analysis of homologies with related components (e.g. the translocation or protease components) of the polypeptides of the present invention.
Multiple amino acid substitutions can be made and tested using known methods of mutagenesis and screening, such as those disclosed by Reidhaar-Olson and Sauer (Science 241:53-7, 1988) or Bowie and Sauer (Proc. Natl. Acad. Sci. USA 86:2152-6, 1989). Briefly, these authors disclose methods for simultaneously randomizing two or more positions in a polypeptide, selecting for functional polypeptide, and then sequencing the mutagenized polypeptides to determine the spectrum of allowable substitutions at each position. Other methods that can be used include phage display (e.g., Lowman et al., Biochem. 30:10832-7, 1991; Ladner et al., U.S. Pat. No. 5,223,409; Huse, WIPO Publication WO 92/06204) and region-directed mutagenesis (Derbyshire et al., Gene 46:145, 1986; Ner et al., DNA 7:127, 1988).
Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this disclosure belongs. Singleton, et al., DICTIONARY OF MICROBIOLOGY AND MOLECULAR BIOLOGY, 20 ED., John Wiley and Sons, New York (1994), and Hale & Marham, THE HARPER COLLINS DICTIONARY OF BIOLOGY, Harper Perennial, NY (1991) provide the skilled person with a general dictionary of many of the terms used in this disclosure.
This disclosure is not limited by the exemplary methods and materials disclosed herein, and any methods and materials similar or equivalent to those described herein can be used in the practice or testing of embodiments of this disclosure. Numeric ranges are inclusive of the numbers defining the range. Unless otherwise indicated, any nucleic acid sequences are written left to right in 5′ to 3′ orientation; amino acid sequences are written left to right in amino to carboxy orientation, respectively.
The headings provided herein are not limitations of the various aspects or embodiments of this disclosure.
Amino acids are referred to herein using the name of the amino acid, the three letter abbreviation or the single letter abbreviation. The term “protein”, as used herein, includes proteins, polypeptides, and peptides. As used herein, the term “amino acid sequence” is synonymous with the term “polypeptide” and/or the term “protein”. In some instances, the term “amino acid sequence” is synonymous with the term “peptide”. In some instances, the term “amino acid sequence” is synonymous with the term “enzyme”. The terms “protein” and “polypeptide” are used interchangeably herein. In the present disclosure and claims, the conventional one-letter and three-letter codes for amino acid residues may be used. The 3-letter code for amino acids as defined in conformity with the IUPACIUB Joint Commission on Biochemical Nomenclature (JCBN). It is also understood that a polypeptide may be coded for by more than one nucleotide sequence due to the degeneracy of the genetic code.
Other definitions of terms may appear throughout the specification. Before the exemplary embodiments are described in more detail, it is to be understood that this disclosure is not limited to particular embodiments described, and as such may vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only, and is not intended to be limiting, since the scope of the present disclosure will be defined only by the appended claims.
Where a range of values is provided, it is understood that each intervening value, to the tenth of the unit of the lower limit unless the context clearly dictates otherwise, between the upper and lower limits of that range is also specifically disclosed. Each smaller range between any stated value or intervening value in a stated range and any other stated or intervening value in that stated range is encompassed within this disclosure. The upper and lower limits of these smaller ranges may independently be included or excluded in the range, and each range where either, neither or both limits are included in the smaller ranges is also encompassed within this disclosure, subject to any specifically excluded limit in the stated range. Where the stated range includes one or both of the limits, ranges excluding either or both of those included limits are also included in this disclosure.
It must be noted that as used herein and in the appended claims, the singular forms “a”, “an”, and “the” include plural referents unless the context clearly dictates otherwise. Thus, for example, reference to “a clostridial neurotoxin” includes a plurality of such candidate agents and reference to “the clostridial neurotoxin” includes reference to one or more clostridial neurotoxins and equivalents thereof known to those skilled in the art, and so forth.
The publications discussed herein are provided solely for their disclosure prior to the filing date of the present application. Nothing herein is to be construed as an admission that such publications constitute prior art to the claims appended hereto.



BRIEF DESCRIPTION OF THE DRAWINGS
Embodiments of the invention will now be described, by way of example only, with reference to the following Figures and Examples.
FIG. 1 shows a comparison of the protein sequence of the activation loop for all BoNT serotypes and a tetanus toxin with two flanking cysteines forming a disulphide bridge connecting the light and heavy chain of a toxin molecule. Factor Xa cleavage site (IDGR) in BoNT/C1 and BoNT/CD underlined.
FIGS. 2A-C show that all four proteases tested: trypsin (TrypZean), Lys-C, factor Xa (FXa) and enterokinase (EK) have the ability to cleave BoNT/C1 activation loop and create a di-chain molecule as compared to C-protease untreated control. (FIG. 2A,B) BoNT/C1(0) (SEQ ID NO: 15) treated with Factor Xa (FXa), enterokinase (EK) and trypsin (1-16 hour time course) as indicated tested by SDS-PAGE in non-reducing (FIG. 2A) and reducing conditions (FIG. 2B). Similarly, proteolytic digest by Lys-C creates di-chain molecules of BoNT/C1 (FIG. 2C). Both trypsin and Lys-C show off-target cleavage within the heavy chain of BoNT/C1. 1-Benchmark (5ul); 2-Control sample (-LysC)-DTT; 3-Control sample (-LysC)+DTT; 4-Activated-DTT; 5-Activated +DTT.
FIG. 3A shows BoNT/X cleavage by Lys-C. Samples were tested in non-reduced and reduced (+DTT) conditions. 1-Benchmark (5ul); 2-No protease control; 3-LysC 0.125 μg/ml; 4-LysC 0.25 μg/ml; 5-LysC 0.5 μg/ml; 6-LysC 1 μg/ml; 7-LysC 2 μg/ml; 8-LysC 4 μg/ml; 9-No protease control +DTT; 10-LysC 0.125 μg/ml +DTT; 11-LysC 0.25 μg/ml +DTT; 12-LysC 0.5 μg/ml +DTT; 13-LysC 1 μg/ml +DTT; 14-LysC 2 μg/ml +DTT; 15-LysC 4 μg/ml +DTT; and 16-Benchmark (5ul).
FIG. 3B shows BoNT/X cleavage by Trypsin (TrypZean), Factor Xa and Enterokinase. Samples were tested in non-reduced and reduced (+DTT) conditions. 1-Benchmark (5ul); 2-No protease control; 3-TrypZean 0.125 μg/ml; 4-TrypZean 0.25 μg/ml; 5-No protease control; 6-TrypZean 1 μg/ml; 7-TrypZean 2 μg/ml; 8-TrypZean 4 μg/ml; 9-Factor Xa 5 μg/ml; 10-Enterokinase 0.01 μg/ml; 11-No protease control +DTT; 12-TrypZean 0.125 μg/ml +DTT; 13-TrypZean 0.25 μg/ml +DTT; 14-No protease control +DTT; 15-TrypZean 1 μg/ml +DTT; 16-TrypZean 2 μg/ml +DTT; 17-TrypZean 4 μg/ml +DTT; 18-Factor Xa 5 μg/ml; 19-Enterokinase 0.01 μg/ml; and 20-Benchmark (5ul).
FIG. 4 shows engineered BoNT/X (SEQ ID NO: 5) treated with indicated proteases and successful BONT di-chain formation evident by comparison between non-reduced (−DTT) and reduced (+DTT) conditions. Lanes 4-7 show in-process samples. Lanes 8-11 show final samples after last polishing step. 1-capture HisHP load; 2-control-DTT-protease; 3-control +DTT-protease; 4-activated-DTT +EK; 5-activated +DTT +EK; 6-activated-DTT +FXa; 7-activated +DTT +FXa; 8-final-DTT EK active.; 9-final +DTT EK activ.; 10-final-DTT FXa activ.; 11-final +DTT FXa activ. FIG. 5A shows BoNT/E tested with 10 μg/ml endoproteinase Lys-C from Lysobacter enzymogenes (“Lys-C”) and Pseudomonas aeruginosa (“rLys-C”) for 2 h @ 37° C. Samples were tested in non-reduced and reduced (+TCEP) conditions. FIG. 5B shows BoNT/E treated with indicated amounts of Trypsin for 7 h at 20° C. (C)-sample stored at −20° C. (T)—no protease control at 20° C. Samples were tested in reduced (+DTT) conditions.
FIG. 6 shows engineered BoNT/E (SEQ ID NO: 11) treated with indicated proteases and successful BONT di-chain formation evident by comparison between non-reduced (−DTT) and reduced (+DTT) conditions. 1-Benchmark (5ul); 2-Control sample (−EK)−DTT; 3-Control sample (−EK) +DTT; 4-Activated (+EK)−DTT; 5-Activated (+EK) +DTT; 11-Benchmark (5ul); 6-Control sample (−FXa)−DTT; 7-Control sample (−FXa) +DTT; 8-Activated (+FXa)−DTT; 9-Activated (+FXa) +DTT.
FIG. 7A shows engineered BoNT/A1C1 (SEQ ID NO: 13) treated with Factor Xa protease and successful BONT di-chain formation evident by comparison between non-reduced (−DTT) and reduced (+DTT) conditions. 1-BenchMark ladder; 2-Control (−FXa −DTT); 3-Control (−FXa +DTT); 4-Activated (+FXa −DTT); 5-Activated (+FXa +DTT). FIG. 7B shows cleavage of BoNT/A1 with FXa or EK after 2 hours compared to a positive control (di-chain BoNT/A1).
FIG. 8A shows BoNT/A1C1 and BeNT/C1 dose dependent inhibition of glutamate release from primary rat neurons. FIG. 8B shows BoNT/C1 dose dependent inhibition of glutamate release from primary rat neurons.
FIG. 9 shows intact mass analysis of non-reduced engineered BoNT/E (SEQ ID NO: 11) activated by enterokinase with an indicated mass of 143853 Da.
FIG. 10 shows intact mass analysis of reduced engineered BoNT/E (SEQ ID NO: 11) activated by enterokinase with an indicated mass of 47518Da and 96338Da.
FIG. 11 shows intact mass analysis of non-reduced engineered BoNT/E (SEQ ID NO: 11) activated by factor Xa with an indicated mass of 143850 Da.
FIG. 12 shows intact mass analysis of reduced engineered BoNT/E (SEQ ID NO: 11) activated by factor Xa with an indicated mass of 47518Da and 96335Da.
FIG. 13 shows LHN/A1 containing an EK cleavage site inserted into the activation loop (SEQ ID NO: 44) and treated with EK compared to a native A1 loop (SEQ ID NO: 46) treated with Lys-C. 1-Benchmark (5ul); 2-empty; 3-SEQ ID NO: 44 +EK −DTT; 4-SEQ ID NO: 44 +EK +DTT; 5-SEQ ID NO: 44−EK −DTT; 6-SEQ ID NO: 44−EK +DTT; 7-Benchmark; 8-SEQ ID NO: 46−LysC −DTT; 9-SEQ ID NO: 46−LysC −DTT; 10-SEQ ID NO: 46 +LysC −DTT; 11-SEQ ID NO: 46 −LysC +DTT; 12-SEQ ID NO: 46 −LysC +DTT; and 13-SEQ ID NO: 46 +LysC +DTT.
FIG. 14 shows activation of engineered BoNT/XA (SEQ ID NO: 7) with FXa.
FIG. 15 shows activation of engineered BoNT/XB (SEQ ID NO: 9) with FXa.








SEQUENCE LISTING



Where an initial Met amino acid residue or a corresponding initial codon is


indicated in any of the following SEQ ID NOs, said residue/codon is


optional.


(C1 Activation Loop Consensus Sequence)


SEQ ID NO: 1



Cys-(Xaa)a,-Ile-Asp/Glu-Gly-Arg-(Yaa)b-Cys



 


(C1 Activation Loop)


SEQ ID NO: 2



CHKAIDGRSLYNKTLDC



 


(C1 Activation Loop Variant)


SEQ ID NO: 3



CHKAIEGRSLYNKTLDC



 


(Nucleotide Sequence of BoNT/X with a C1 Activation Loop)


SEQ ID NO: 4



ATGAAACTGGAAATCAACAAATTCAACTACAACGATCCGATCGATGGCATTAATGTTATTACCATGCG



 


TCCGCCTCGTCATAGCGATAAAATCAATAAAGGTAAAGGTCCGTTCAAAGCCTTTCAGGTGATTAAAA


 


ACATTTGGATTGTGCCGGAACGCTACAACTTTACCAATAATACCAACGATCTGAACATTCCGAGCGAA


 


CCGATTATGGAAGCAGATGCCATTTATAACCCGAACTATCTGAATACCCCGAGCGAAAAAGATGAATT


 


TCTGCAGGGTGTTATCAAAGTGCTGGAACGCATTAAAAGCAAACCGGAAGGTGAAAAACTGCTGGAAC


 


TGATTAGCAGCAGCATTCCGCTGCCGCTGGTTAGCAATGGTGCACTGACCCTGAGCGATAATGAAACC


 


ATTGCATATCAAGAGAACAACAACATTGTGAGCAATCTGCAGGCAAACCTGGTTATTTATGGTCCGGG


 


TCCTGATATTGCAAATAATGCAACCTATGGTCTGTATAGCACCCCGATTAGTAATGGTGAAGGTACAC


 


TGAGCGAAGTTAGCTTTAGCCCGTTTTATCTGAAACCGTTTGATGAAAGCTATGGCAATTATCGTAGC


 


CTGGTGAATATCGTGAACAAATTCGTGAAACGTGAATTTGCACCTGATCCGGCAAGCACCCTGATGCA


 


TGAACTGGTTCATGTTACCCATAATCTGTATGGTATTAGCAACCGCAACTTCTACTATAACTTTGACA


 


CCGGCAAAATTGAAACCAGCCGTCAGCAGAATAGCCTGATTTTTGAAGAACTGCTGACCTTTGGTGGC


 


ATTGATAGCAAAGCAATTAGCAGCCTGATCATCAAGAAAATTATCGAAACCGCCAAGAACAACTATAC


 


CACGCTGATTAGCGAACGCCTGAATACCGTTACCGTTGAAAATGATCTGCTGAAATATATCAAAAACA


 


AAATCCCGGTTCAGGGTCGTCTGGGTAACTTTAAACTGGATACCGCAGAATTCGAGAAAAAGCTGAAT


 


ACCATTCTGTTTGTGCTGAACGAAAGCAATCTGGCACAGCGTTTTAGCATTCTGGTTCGTAAACATTA


 


CCTGAAAGAACGTCCGATTGATCCGATTTATGTGAACATTCTGGATGACAATAGCTACAGCACCCTGG


 


AAGGTTTTAACATTAGCAGTCAGGGTAGCAATGATTTCCAAGGTCAGCTGCTGGAAAGCAGCTATTTT


 


GAAAAAATTGAAAGCAATGCCCTGCGTGCCTTTATCAAAATTTGTCATAAAGCCATTGATGGTCGCAG


 


CCTGTATAACAAAACCCTGGATTGTATTGAGGTGGAAAACAAAGACCTGTTTCTGATTAGCAACAAAG


 


ATAGCCTGAACGATATTAACCTGAGCGAAGAAAAAATCAAACCGGAAACCACCGTGTTCTTCAAAGAT


 


AAACTGCCTCCGCAGGATATTACGCTGAGCAATTATGATTTTACCGAAGCCAATAGCATTCCGAGCAT


 


TAGCCAGCAGAACATTCTGGAACGTAATGAAGAACTGTATGAACCGATTCGCAATAGCCTGTTTGAAA


 


TCAAAACCATCTATGTGGATAAGCTGACCACCTTTCATTTTCTGGAAGCCCAGAATATTGATGAGAGC


 


ATTGATAGCAGCAAAATTCGTGTTGAACTGACCGATAGCGTTGATGAAGCACTGAGCAATCCGAATAA


 


AGTTTATAGCCCGTTCAAGAACATGAGCAACACCATTAATAGCATTGAAACCGGTATTACCAGCACCT


 


ACATCTTTTATCAGTGGCTGCGTAGCATCGTGAAAGATTTTAGTGATGAAACCGGCAAAATCGACGTG


 


ATTGATAAAAGCAGCGATACCCTGGCAATTGTTCCGTATATTGGTCCGCTGCTGAATATTGGTAATGA


 


TATTCGTCATGGCGATTTTGTGGGTGCAATTGAACTGGCAGGCATTACCGCACTGCTGGAATATGTTC


 


CGGAATTTACCATTCCGATTCTGGTTGGTCTGGAAGTTATTGGTGGCGAACTGGCACGTGAACAGGTT


 


GAAGCAATTGTTAATAATGCCCTGGATAAACGCGATCAGAAATGGGCAGAAGTTTACAATATTACCAA


 


AGCACAGTGGTGGGGCACCATTCATTTACAGATTAATACCCGTCTGGCCCATACCTATAAAGCCCTGA


 


GCCGTCAGGCAAATGCCATTAAAATGAATATGGAATTTCAGCTGGCCAACTACAAAGGCAACATTGAT


 


GATAAAGCCAAGATCAAAAACGCCATCAGCGAAACCGAAATTCTGCTGAACAAAAGCGTTGAACAGGC


 


CATGAAAAACACCGAGAAATTCATGATTAAACTGAGCAACAGCTACCTGACCAAAGAAATGATTCCGA


 


AAGTTCAGGACAACCTGAAAAACTTTGATCTGGAAACCAAAAAGACCCTGGACAAGTTCATCAAAGAG


 


AAAGAAGATATCCTGGGCACCAATCTGAGCAGCAGCCTGCGTCGTAAAGTTAGCATTCGTCTGAATAA


 


AAACATTGCCTTCGACATCAACGATATCCCGTTTAGCGAATTTGATGATCTGATCAACCAGTACAAAA


 


ACGAGATCGAAGATTATGAAGTGCTGAATCTGGGTGCAGAAGATGGCAAAATCAAAGATCTGAGCGGT


 


ACAACCAGCGATATCAATATTGGTTCAGATATCGAACTGGCCGATGGTCGTGAAAATAAAGCGATTAA


 


GATTAAAGGCAGCGAGAACAGCACCATCAAAATTGCAATGAACAAATATCTGCGTTTTAGCGCGACCG


 


ATAACTTTAGCATTAGCTTTTGGATCAAACATCCGAAACCGACCAATCTGCTTAATAACGGTATTGAA


 


TATACCCTGGTCGAGAACTTTAATCAGCGTGGTTGGAAAATTAGCATCCAGGATAGCAAACTGATTTG


 


GTATCTGCGCGATCACAATAACAGCATCAAAATCGTTACACCGGATTATATTGCGTTTAATGGCTGGA


 


ACCTGATTACCATTACAAACAATCGTAGCAAAGGCAGCATCGTGTATGTTAACGGTAGCAAAATTGAA


 


GAGAAGGACATTAGCAGCATTTGGAATACCGAAGTGGATGATCCGATTATCTTCCGCCTGAAAAATAA


 


CCGTGATACCCAGGCATTTACCCTGCTGGATCAGTTTAGCATTTATCGCAAAGAACTGAACCAGAACG


 


AAGTGGTGAAACTGTATAACTACTACTTCAACAGCAACTACATTCGCGATATTTGGGGTAATCCGCTG


 


CAGTACAACAAAAAATACTATCTGCAGACCCAGGACAAACCTGGTAAAGGTCTGATCCGCGAATATTG


 


GAGCAGCTTTGGTTATGATTATGTGATTCTGAGCGATAGCAAGACCATTACCTTTCCGAATAATATCC


 


GTTATGGTGCCCTGTATAATGGTAGCAAAGTGCTGATCAAGAACAGCAAAAAACTGGATGGTCTGGTG


 


CGCAATAAAGATTTCATTCAGCTGGAAATCGATGGCTATAATATGGGTATTAGCGCAGATCGCTTTAA


 


CGAGGATACCAACTATATTGGCACCACCTATGGTACAACCCATGATCTGACCACCGATTTTGAAATTA


 


TTCAGCGCCAAGAGAAATACCGCAATTATTGTCAGCTGAAAACCCCGTATAACATCTTTCATAAAAGC


 


GGTCTGATGAGCACCGAAACCAGCAAACCGACCTTCCATGATTATCGCGATTGGGTTTATAGCAGCGC


 


ATGGTATTTTCAGAACTATGAAAATCTGAACCTGCGCAAACATACCAAAACCAACTGGTATTTTATCC


 


CGAAAGATGAAGGTTGGGATGAAGATCTGGAAGTGCTGTTTCAGGGTCCGCATCATCACCACCATCAC


 


CATCATCATCACTGA


 


(Polypeptide Sequence of BoNT/X with a C1 Activation Loop)


SEQ ID NO: 5



MKLEINKFNYNDPIDGINVITMRPPRHSDKINKGKGPFKAFQVIKNIWIVPERYNFTNNTNDLNIPSE



 


PIMEADAIYNPNYLNTPSEKDEFLQGVIKVLERIKSKPEGEKLLELISSSIPLPLVSNGALTLSDNET


 


IAYQENNNIVSNLQANLVIYGPGPDIANNATYGLYSTPISNGEGTLSEVSFSPFYLKPFDESYGNYRS


 


LVNIVNKFVKREFAPDPASTLMHELVHVTHNLYGISNRNFYYNFDTGKIETSRQQNSLIFEELLTFGG


 


IDSKAISSLIIKKIIETAKNNYTTLISERLNTVTVENDLLKYIKNKIPVQGRLGNFKLDTAEFEKKLN


 


TILFVLNESNLAQRFSILVRKHYLKERPIDPIYVNILDDNSYSTLEGFNISSQGSNDFQGQLLESSYF


 


EKIESNALRAFIKICHKAIDGRSLYNKTLDCIEVENKDLFLISNKDSLNDINLSEEKIKPETTVFFKD


 


KLPPQDITLSNYDFTEANSIPSISQQNILERNEELYEPIRNSLFEIKTIYVDKLTTFHFLEAQNIDES


 


IDSSKIRVELTDSVDEALSNPNKVYSPFKNMSNTINSIETGITSTYIFYQWLRSIVKDFSDETGKIDV


 


IDKSSDTLAIVPYIGPLLNIGNDIRHGDFVGAIELAGITALLEYVPEFTIPILVGLEVIGGELAREQV


 


EAIVNNALDKRDQKWAEVYNITKAQWWGTIHLQINTRLAHTYKALSRQANAIKMNMEFQLANYKGNID


 


DKAKIKNAISETEILLNKSVEQAMKNTEKFMIKLSNSYLTKEMIPKVQDNLKNFDLETKKTLDKFIKE


 


KEDILGTNLSSSLRRKVSIRLNKNIAFDINDIPFSEFDDLINQYKNEIEDYEVLNLGAEDGKIKDLSG


 


TTSDINIGSDIELADGRENKAIKIKGSENSTIKIAMNKYLRFSATDNFSISFWIKHPKPTNLLNNGIE


 


YTLVENFNQRGWKISIQDSKLIWYLRDHNNSIKIVTPDYIAFNGWNLITITNNRSKGSIVYVNGSKIE


 


EKDISSIWNTEVDDPIIFRLKNNRDTQAFTLLDQFSIYRKELNQNEVVKLYNYYFNSNYIRDIWGNPL


 


QYNKKYYLQTQDKPGKGLIREYWSSFGYDYVILSDSKTITFPNNIRYGALYNGSKVLIKNSKKLDGLV


 


RNKDFIQLEIDGYNMGISADRFNEDTNYIGTTYGTTHDLTTDFEIIQRQEKYRNYCQLKTPYNIFHKS


 


GLMSTETSKPTFHDYRDWVYSSAWYFQNYENLNLRKHTKTNWYFIPKDEGWDEDLEVLFQGPHHHHHH


 


HHHH


 


(Nucleotide Sequence of BoNT/XA [LHNX-HCA] with a C1 Activation Loop)


SEQ ID NO: 6



ATGAAACTGGAAATCAACAAATTCAACTACAACGATCCGATCGATGGCATTAATGTTATTACCATGCG



 


TCCGCCTCGTCATAGCGATAAAATCAATAAAGGTAAAGGTCCGTTCAAAGCCTTTCAGGTGATTAAAA


 


ACATTTGGATTGTGCCGGAACGCTACAACTTTACCAATAATACCAACGATCTGAACATTCCGAGCGAA


 


CCGATTATGGAAGCAGATGCCATTTATAACCCGAACTATCTGAATACCCCGAGCGAAAAAGATGAATT


 


TCTGCAGGGTGTTATCAAAGTGCTGGAACGCATTAAAAGCAAACCGGAAGGTGAAAAACTGCTGGAAC


 


TGATTAGCAGCAGCATTCCGCTGCCGCTGGTTAGCAATGGTGCACTGACCCTGAGCGATAATGAAACC


 


ATTGCATATCAAGAGAACAACAACATTGTGAGCAATCTGCAGGCAAACCTGGTTATTTATGGTCCGGG


 


TCCTGATATTGCAAATAATGCAACCTATGGTCTGTATAGCACCCCGATTAGTAATGGTGAAGGTACAC


 


TGAGCGAAGTTAGCTTTAGCCCGTTTTATCTGAAACCGTTTGATGAAAGCTATGGCAATTATCGTAGC


 


CTGGTGAATATCGTGAACAAATTCGTGAAACGTGAATTTGCACCTGATCCGGCAAGCACCCTGATGCA


 


TGAACTGGTTCATGTTACCCATAATCTGTATGGTATTAGCAACCGCAACTTCTACTATAACTTTGACA


 


CCGGCAAAATTGAAACCAGCCGTCAGCAGAATAGCCTGATTTTTGAAGAACTGCTGACCTTTGGTGGC


 


ATTGATAGCAAAGCAATTAGCAGCCTGATCATCAAGAAAATTATCGAAACCGCCAAGAACAACTATAC


 


CACGCTGATTAGCGAACGCCTGAATACCGTTACCGTTGAAAATGATCTGCTGAAATATATCAAAAACA


 


AAATCCCGGTTCAGGGTCGTCTGGGTAACTTTAAACTGGATACCGCAGAATTCGAGAAAAAGCTGAAT


 


ACCATTCTGTTTGTGCTGAACGAAAGCAATCTGGCACAGCGTTTTAGCATTCTGGTTCGTAAACATTA


 


CCTGAAAGAACGTCCGATTGATCCGATTTATGTGAACATTCTGGATGACAATAGCTACAGCACCCTGG


 


AAGGTTTTAACATTAGCAGTCAGGGTAGCAATGATTTTCAGGGCCAGCTGCTGGAAAGCAGCTATTTT


 


GAAAAAATTGAATCCAATGCGCTGCGTGCCTTTATCAAAATTTGTCATAAAGCCATTGATGGTCGCAG


 


CCTGTATAACAAAACCCTGGATTGTATTGAAGTGGAAAACAAAGACCTGTTCCTGATTAGCAATAAAG


 


ATAGCCTGAACGATATCAACCTGAGCGAAGAAAAAATCAAACCGGAAACCACCGTGTTCTTCAAAGAT


 


AAACTGCCTCCGCAGGATATTACCCTGAGCAATTATGATTTTACCGAAGCCAATAGCATTCCGAGCAT


 


TAGCCAGCAGAACATTCTGGAACGTAATGAAGAACTGTATGAACCGATTCGCAATAGCCTGTTTGAAA


 


TCAAAACCATCTATGTGGATAAGCTGACCACCTTTCATTTTCTGGAAGCCCAGAATATTGATGAGAGC


 


ATTGATAGCAGCAAAATTCGTGTTGAACTGACCGATAGCGTTGATGAAGCACTGAGCAATCCGAATAA


 


AGTTTATAGCCCGTTCAAGAACATGAGCAACACCATTAATAGCATTGAAACCGGTATTACCAGCACCT


 


ACATCTTTTATCAGTGGCTGCGTAGCATCGTGAAAGATTTTAGTGATGAAACCGGCAAAATCGACGTG


 


ATTGATAAAAGCAGCGATACCCTGGCCATTGTTCCGTATATTGGTCCGCTGCTGAATATTGGTAATGA


 


TATTCGTCATGGCGATTTTGTGGGTGCAATTGAACTGGCAGGCATTACCGCACTGCTGGAATATGTTC


 


CGGAATTTACCATTCCGATTCTGGTTGGTCTGGAAGTTATTGGTGGCGAACTGGCACGTGAACAGGTT


 


GAAGCAATTGTTAATAATGCCCTGGATAAACGCGATCAGAAATGGGCAGAAGTTTACAATATTACCAA


 


AGCACAGTGGTGGGGCACCATTCATTTACAGATTAATACCCGTCTGGCCCATACCTATAAAGCCCTGA


 


GCCGTCAGGCAAATGCCATTAAAATGAATATGGAATTTCAGCTGGCCAACTACAAAGGCAACATTGAT


 


GATAAAGCCAAGATCAAAAACGCCATCAGCGAAACCGAAATTCTGCTGAACAAAAGCGTTGAACAGGC


 


CATGAAAAACACCGAGAAATTCATGATTAAACTGAGCAACAGCTACCTGACCAAAGAAATGATTCCGA


 


AAGTTCAGGACAACCTGAAAAACTTTGATCTGGAAACCAAAAAGACCCTGGACAAGTTCATCAAAGAG


 


AAAGAAGATATCCTGGGCACCAATCTGAGCAGCAGCCTGCGTCGTAAAGTTAGCATTCGTCTGAATAA


 


AAACATTGCCTTCGACATCAACGATATCCCGTTTAGCGAATTTGATGATCTGATCAACCAGTACAAAA


 


ACGAGATCGAAGATTATGAAGTGCTGAATCTGGGTGCAGAAGATGGCAAAATCAAAGATCTGAGCGGT


 


ACAACCAGCGATATTAACATTGGTAGCGATATCGAAATCATCAACACCAGCATTCTGAATCTGCGCTA


 


TGAAAGCAATCATCTGATTGATCTGAGCCGTTATGCGTCCAAAATCAATATTGGCAGCAAAGTGAATT


 


TCGACCCGATCGATAAAAATCAGATCCAGCTGTTTAATCTGGAAAGCTCCAAAATTGAGGTGATTCTG


 


AAAAACGCGATTGTGTACAATAGCATGTATGAGAATTTCTCAACCAGCTTCTGGATTCGCATTCCGAA


 


ATACTTTAACAGCATCAGCCTGAACAACGAGTATACCATTATCAACTGCATGGAAAACAATAGCGGTT


 


GGAAAGTGAGCCTGAATTATGGTGAAATTATCTGGACCCTGCAGGATACCCAAGAAATCAAACAGCGT


 


GTTGTGTTCAAATACAGCCAGATGATTAACATCAGCGATTACATTAACCGCTGGATCTTTGTTACCAT


 


TACCAACAATCGCCTGAATAACAGCAAGATCTATATTAACGGTCGTCTGATTGACCAGAAACCGATTA


 


GTAATCTGGGTAATATTCATGCCAGCAACAACATCATGTTCAAACTGGATGGTTGTCGTGATACCCAT


 


CGTTATATTTGGATCAAGTATTTTAACCTGTTTGATAAAGAACTGAACGAAAAAGAAATTAAGGATCT


 


GTATGATAACCAGTCCAATAGCGGCATCCTGAAGGATTTTTGGGGTGATTATCTGCAGTATGACAAAC


 


CGTATTATATGCTGAACCTGTACGATCCGAACAAATATGTGGATGTGAATAATGTGGGTATCCGTGGC


 


TATATGTATCTGAAAGGTCCGCGTGGTAGCGTTATGACCACCAACATTTATCTGAATAGCAGCCTGTA


 


TCGTGGCACCAAATTCATCATCAAAAAATACGCCAGCGGCAACAAAGATAATATTGTGCGTAATAATG


 


ACCGCGTGTATATCAATGTGGTGGTGAAGAATAAAGAATATCGTCTGGCAACCAATGCAAGCCAGGCA


 


GGCGTTGAAAAAATTCTGAGCGCACTGGAAATCCCGGATGTGGGTAATCTGAGCCAGGTTGTTGTTAT


 


GAAAAGCAAAAATGATCAGGGCATCACCAACAAGTGCAAAATGAATCTGCAGGACAATAACGGCAACG


 


ACATTGGTTTTATTGGCTTTCACCAGTTTAACAACATTGCCAAACTGGTTGCGAGCAATTGGTATAAT


 


CGTCAGATTGAACGTAGCAGTCGTACCCTGGGTTGTAGCTGGGAATTTATTCCGGTTGATGATGGTTG


 


GGGTGAACGTCCGCTGCATCATCACCACCATCACCATCACCACCATTAA


 


(Polypeptide Sequence of BoNT/XA [LHNX-HCA] with a C1 Activation Loop)


SEQ ID NO: 7



MKLEINKFNYNDPIDGINVITMRPPRHSDKINKGKGPFKAFQVIKNIWIVPERYNFTNNTNDLNIPSE



 


PIMEADAIYNPNYLNTPSEKDEFLQGVIKVLERIKSKPEGEKLLELISSSIPLPLVSNGALTLSDNET


 


IAYQENNNIVSNLQANLVIYGPGPDIANNATYGLYSTPISNGEGTLSEVSFSPFYLKPFDESYGNYRS


 


LVNIVNKFVKREFAPDPASTLMHELVHVTHNLYGISNRNFYYNFDTGKIETSRQQNSLIFEELLTFGG


 


IDSKAISSLIIKKIIETAKNNYTTLISERLNTVTVENDLLKYIKNKIPVQGRLGNFKLDTAEFEKKLN


 


TILFVLNESNLAQRFSILVRKHYLKERPIDPIYVNILDDNSYSTLEGFNISSQGSNDFQGQLLESSYF


 


EKIESNALRAFIKICHKAIDGRSLYNKTLDCIEVENKDLFLISNKDSLNDINLSEEKIKPETTVFFKD


 


KLPPQDITLSNYDFTEANSIPSISQQNILERNEELYEPIRNSLFEIKTIYVDKLTTFHFLEAQNIDES


 


IDSSKIRVELTDSVDEALSNPNKVYSPFKNMSNTINSIETGITSTYIFYQWLRSIVKDFSDETGKIDV


 


IDKSSDTLAIVPYIGPLLNIGNDIRHGDFVGAIELAGITALLEYVPEFTIPILVGLEVIGGELAREQV


 


EAIVNNALDKRDQKWAEVYNITKAQWWGTIHLQINTRLAHTYKALSRQANAIKMNMEFQLANYKGNID


 


DKAKIKNAISETEILLNKSVEQAMKNTEKFMIKLSNSYLTKEMIPKVQDNLKNFDLETKKTLDKFIKE


 


KEDILGTNLSSSLRRKVSIRLNKNIAFDINDIPFSEFDDLINQYKNEIEDYEVLNLGAEDGKIKDLSG


 


TTSDINIGSDIEIINTSILNLRYESNHLIDLSRYASKINIGSKVNFDPIDKNQIQLFNLESSKIEVIL


 


KNAIVYNSMYENFSTSFWIRIPKYFNSISLNNEYTIINCMENNSGWKVSLNYGEIIWTLQDTQEIKQR


 


VVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLGNIHASNNIMFKLDGCRDTH


 


RYIWIKYFNLFDKELNEKEIKDLYDNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNKYVDVNNVGIRG


 


YMYLKGPRGSVMTTNIYLNSSLYRGTKFIIKKYASGNKDNIVRNNDRVYINVVVKNKEYRLATNASQA


 


GVEKILSALEIPDVGNLSQVVVMKSKNDQGITNKCKMNLQDNNGNDIGFIGFHQFNNIAKLVASNWYN


 


RQIERSSRTLGCSWEFIPVDDGWGERPLHHHHHHHHHH


 


(Nucleotide Sequence of BoNT/XB [LHNX-HCB] with a C1 Activation Loop)


SEQ ID NO: 8



ATGAAACTGGAAATCAACAAATTCAACTACAACGATCCGATCGATGGCATTAATGTTATTACCATGCG



 


TCCGCCTCGTCATAGCGATAAAATCAATAAAGGTAAAGGTCCGTTCAAAGCCTTTCAGGTGATTAAAA


 


ACATTTGGATTGTGCCGGAACGCTACAACTTTACCAATAATACCAACGATCTGAACATTCCGAGCGAA


 


CCGATTATGGAAGCAGATGCCATTTATAACCCGAACTATCTGAATACCCCGAGCGAAAAAGATGAATT


 


TCTGCAGGGTGTTATCAAAGTGCTGGAACGCATTAAAAGCAAACCGGAAGGTGAAAAACTGCTGGAAC


 


TGATTAGCAGCAGCATTCCGCTGCCGCTGGTTAGCAATGGTGCACTGACCCTGAGCGATAATGAAACC


 


ATTGCATATCAAGAGAACAACAACATTGTGAGCAATCTGCAGGCAAACCTGGTTATTTATGGTCCGGG


 


TCCTGATATTGCAAATAATGCAACCTATGGTCTGTATAGCACCCCGATTAGTAATGGTGAAGGTACAC


 


TGAGCGAAGTTAGCTTTAGCCCGTTTTATCTGAAACCGTTTGATGAAAGCTATGGCAATTATCGTAGC


 


CTGGTGAATATCGTGAACAAATTCGTGAAACGTGAATTTGCACCTGATCCGGCAAGCACCCTGATGCA


 


TGAACTGGTTCATGTTACCCATAATCTGTATGGTATTAGCAACCGCAACTTCTACTATAACTTTGACA


 


CCGGCAAAATTGAAACCAGCCGTCAGCAGAATAGCCTGATTTTTGAAGAACTGCTGACCTTTGGTGGC


 


ATTGATAGCAAAGCAATTAGCAGCCTGATCATCAAGAAAATTATCGAAACCGCCAAGAACAACTATAC


 


CACGCTGATTAGCGAACGCCTGAATACCGTTACCGTTGAAAATGATCTGCTGAAATATATCAAAAACA


 


AAATCCCGGTTCAGGGTCGTCTGGGTAACTTTAAACTGGATACCGCAGAATTCGAGAAAAAGCTGAAT


 


ACCATTCTGTTTGTGCTGAACGAAAGCAATCTGGCACAGCGTTTTAGCATTCTGGTTCGTAAACATTA


 


CCTGAAAGAACGTCCGATTGATCCGATTTATGTGAACATTCTGGATGACAATAGCTACAGCACCCTGG


 


AAGGTTTTAACATTAGCAGTCAGGGTAGCAATGATTTTCAGGGCCAGCTGCTGGAAAGCAGCTATTTT


 


GAAAAAATTGAATCCAATGCGCTGCGTGCCTTTATCAAAATTTGTCATAAAGCCATTGATGGTCGCAG


 


CCTGTATAACAAAACCCTGGATTGTATTGAAGTGGAAAACAAAGACCTGTTCCTGATTAGCAATAAAG


 


ATAGCCTGAACGATATCAACCTGAGCGAAGAAAAAATCAAACCGGAAACCACCGTGTTCTTCAAAGAT


 


AAACTGCCTCCGCAGGATATTACCCTGAGCAATTATGATTTTACCGAAGCCAATAGCATTCCGAGCAT


 


TAGCCAGCAGAACATTCTGGAACGTAATGAAGAACTGTATGAACCGATTCGCAATAGCCTGTTTGAAA


 


TCAAAACCATCTATGTGGATAAGCTGACCACCTTTCATTTTCTGGAAGCCCAGAATATTGATGAGAGC


 


ATTGATAGCAGCAAAATTCGTGTTGAACTGACCGATAGCGTTGATGAAGCACTGAGCAATCCGAATAA


 


AGTTTATAGCCCGTTCAAGAACATGAGCAACACCATTAATAGCATTGAAACCGGTATTACCAGCACCT


 


ACATCTTTTATCAGTGGCTGCGTAGCATCGTGAAAGATTTTAGTGATGAAACCGGCAAAATCGACGTG


 


ATTGATAAAAGCAGCGATACCCTGGCCATTGTTCCGTATATTGGTCCGCTGCTGAATATTGGTAATGA


 


TATTCGTCATGGCGATTTTGTGGGTGCAATTGAACTGGCAGGCATTACCGCACTGCTGGAATATGTTC


 


CGGAATTTACCATTCCGATTCTGGTTGGTCTGGAAGTTATTGGTGGCGAACTGGCACGTGAACAGGTT


 


GAAGCAATTGTTAATAATGCCCTGGATAAACGCGATCAGAAATGGGCAGAAGTTTACAATATTACCAA


 


AGCACAGTGGTGGGGCACCATTCATTTACAGATTAATACCCGTCTGGCCCATACCTATAAAGCCCTGA


 


GCCGTCAGGCAAATGCCATTAAAATGAATATGGAATTTCAGCTGGCCAACTACAAAGGCAACATTGAT


 


GATAAAGCCAAGATCAAAAACGCCATCAGCGAAACCGAAATTCTGCTGAACAAAAGCGTTGAACAGGC


 


CATGAAAAACACCGAGAAATTCATGATTAAACTGAGCAACAGCTACCTGACCAAAGAAATGATTCCGA


 


AAGTTCAGGACAACCTGAAAAACTTTGATCTGGAAACCAAAAAGACCCTGGACAAGTTCATCAAAGAG


 


AAAGAAGATATCCTGGGCACCAATCTGAGCAGCAGCCTGCGTCGTAAAGTTAGCATTCGTCTGAATAA


 


AAACATTGCCTTCGACATCAACGATATCCCGTTTAGCGAATTTGATGATCTGATCAACCAGTACAAAA


 


ACGAGATCGAAGATTATGAAGTGCTGAATCTGGGTGCAGAAGATGGCAAAATCAAAGATCTGAGCGGT


 


ACAACCAGCGATATTAACATTGGTAGCGATATCGAAATCCTGAACAACATTATTCTGAACCTGCGCTA


 


TAAAGATAACAACCTGATTGATCTGAGTGGCTATGGTGCAAAAGTTGAAGTTTATGATGGTGTGGAAC


 


TGAACGACAAAAACCAGTTCAAACTGACCAGCAGCGCAAATTCAAAAATTCGCGTTACCCAGAACCAG


 


AACATCATTTTTAACAGCGTGTTTCTGGATTTCAGCGTGAGCTTTTGGATTCGTATTCCGAAATATAA


 


GAACGACGGCATCCAGAACTATATCCACAATGAATATACCATCATCAACTGCATGAAGAATAACAGCG


 


GTTGGAAAATTAGCATCCGTGGCAATCGTATTATTTGGACCCTGATCGATATTAATGGCAAAACCAAG


 


AGCGTGTTTTTCGAGTATAACATCCGTGAAGATATCAGCGAATACATCAACCGTTGGTTTTTTGTGAC


 


CATTACCAACAATCTGAACAACGCCAAAATCTACATTAACGGCAAACTGGAAAGCAACACCGATATCA


 


AAGATATTCGTGAAGTGATTGCCAACGGCGAGATTATCTTTAAACTGGATGGTGATATTGATCGCACC


 


CAGTTTATTTGGATGAAATACTTCAGCATCTTCAACACCGAACTGAGCCAGAGCAATATTGAAGAACG


 


CTATAAAATCCAGAGCTACAGCGAGTATCTGAAAGACTTTTGGGGTAATCCGCTGATGTACAACAAAG


 


AATACTACATGTTTAATGCCGGTAACAAAAACAGCTATATCAAACTGAAAAAGGATAGTCCGGTGGGT


 


GAAATTCTGACCCGTAGCAAATATAACCAGAATAGCAAGTATATCAACTATCGCGATCTGTACATCGG


 


CGAGAAATTTATCATTCGTCGTAAAAGCAACTCCCAGAGCATTAACGATGATATTGTGCGCAAAGAGG


 


ATTACATCTACCTGGATTTTTTCAACCTGAATCAAGAGTGGCGTGTGTACACCTATAAGTACTTCAAA


 


AAAGAAGAAATGAAACTGTTTCTGGCACCGATCTATGATAGCGACGAATTTTACAATACCATTCAGAT


 


TAAAGAATATGATGAACAGCCGACCTATAGCTGTCAGCTGCTGTTTAAAAAGGATGAAGAAAGCACGG


 


ATGAAATTGGCCTGATTGGTATCCATCGTTTTTATGAAAGCGGCATCGTGTTCGAAGAGTACAAAGAT


 


TATTTCTGCATCAGCAAATGGTATCTTAAAGAGGTGAAACGCAAACCGTATAATCTGAAACTGGGTTG


 


CAATTGGCAGTTCATCCCGAAAGATGAAGGTTGGACCGAACATCATCACCACCATCACCATCATCATC


 


ACTGA


 


(Polypeptide Sequence of BoNT/XB [LHNX-HCB] with a C1 Activation Loop)


SEQ ID NO: 9



MKLEINKFNYNDPIDGINVITMRPPRHSDKINKGKGPFKAFQVIKNIWIVPERYNFTNNTNDLNIPSE



 


PIMEADAIYNPNYLNTPSEKDEFLQGVIKVLERIKSKPEGEKLLELISSSIPLPLVSNGALTLSDNET


 


IAYQENNNIVSNLQANLVIYGPGPDIANNATYGLYSTPISNGEGTLSEVSFSPFYLKPFDESYGNYRS


 


LVNIVNKFVKREFAPDPASTLMHELVHVTHNLYGISNRNFYYNFDTGKIETSRQQNSLIFEELLTFGG


 


IDSKAISSLIIKKIIETAKNNYTTLISERLNTVTVENDLLKYIKNKIPVQGRLGNFKLDTAEFEKKLN


 


TILFVLNESNLAQRFSILVRKHYLKERPIDPIYVNILDDNSYSTLEGFNISSQGSNDFQGQLLESSYF


 


EKIESNALRAFIKICHKAIDGRSLYNKTLDCIEVENKDLFLISNKDSLNDINLSEEKIKPETTVFFKD


 


KLPPQDITLSNYDFTEANSIPSISQQNILERNEELYEPIRNSLFEIKTIYVDKLTTFHFLEAQNIDES


 


IDSSKIRVELTDSVDEALSNPNKVYSPFKNMSNTINSIETGITSTYIFYQWLRSIVKDFSDETGKIDV


 


IDKSSDTLAIVPYIGPLLNIGNDIRHGDFVGAIELAGITALLEYVPEFTIPILVGLEVIGGELAREQV


 


EAIVNNALDKRDQKWAEVYNITKAQWWGTIHLQINTRLAHTYKALSRQANAIKMNMEFQLANYKGNID


 


DKAKIKNAISETEILLNKSVEQAMKNTEKFMIKLSNSYLTKEMIPKVQDNLKNFDLETKKTLDKFIKE


 


KEDILGTNLSSSLRRKVSIRLNKNIAFDINDIPFSEFDDLINQYKNEIEDYEVLNLGAEDGKIKDLSG


 


TTSDINIGSDIEILNNIILNLRYKDNNLIDLSGYGAKVEVYDGVELNDKNQFKLTSSANSKIRVTQNQ


 


NIIFNSVFLDFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMKNNSGWKISIRGNRIIWTLIDINGKTK


 


SVFFEYNIREDISEYINRWFFVTITNNLNNAKIYINGKLESNTDIKDIREVIANGEIIFKLDGDIDRT


 


QFIWMKYFSIFNTELSQSNIEERYKIQSYSEYLKDFWGNPLMYNKEYYMFNAGNKNSYIKLKKDSPVG


 


EILTRSKYNQNSKYINYRDLYIGEKFIIRRKSNSQSINDDIVRKEDYIYLDFFNLNQEWRVYTYKYFK


 


KEEMKLFLAPIYDSDEFYNTIQIKEYDEQPTYSCQLLFKKDEESTDEIGLIGIHRFYESGIVFEEYKD


 


YFCISKWYLKEVKRKPYNLKLGCNWQFIPKDEGWTEHHHHHHHHHH


 


(Nucleotide Sequence of BoNT/E with a C1 Activation Loop)


SEQ ID NO: 10



atgccgaaaatcaactctttcaactacaacgacccggttaacgaccgtaccatcctgtatatcaaacc



 


gggtggttgccaggagttctacaaatctttcaacatcatgaaaaacatctggatcatcccggaacgta


 


acgttatcggtaccaccccgcaggacttccacccgccgacctctctgaaaaacggtgactcttcttac


 


tacgacccgaactacctccagtctgacgaagaaaaagaccgtttcctgaaaatcgttaccaaaatctt


 


caaccgtatcaacaacaacctgtctggtggtatcctgctggaagaactgtctaaagctaacccgtacc


 


tgggtaacgacaacaccccggacaaccagttccacatcggtgacgcttctgctgttgaaatcaaattc


 


tctaacggttctcaggacatcctgctgccgaacgttatcatcatgggtgctgaaccggacctgttcga


 


aaccaactcttctaacatctctctgcgtaacaactacatgccgtctaaccacggtttcggttctatcg


 


ctatcgttaccttctctccggaatactctttccgtttcaacgacaacagcatgaacgagttcatccag


 


gacccggctctgaccctgatgcaccaactgatctattctctgcacggtctgtacggtgctaaaggtat


 


caccaccaaatacaccatcacccagaaacagaacccgctgatcaccaacatccgtggtaccaacatcg


 


aagagttcctgaccttcggtggtaccgacctgaacatcatcacctctgctcagtctaacgacatctac


 


accaacctgctggctgactacaaaaaaatcgcttctaaactgtctaaagttcaggtttctaacccgct


 


gctgaacccgtacaaagacgttttcgaagctaaatacggtctggacaaagacgcttctggtatctact


 


ctgttaacatcaacaaattcaacgacatcttcaaaaaactgtactctttcaccgagttcgacctggcg


 


accaaattccaggttaaatgccgtcagacctacatcggtcagtacaaatacttcaaactgtctaacct


 


gctgaacgactctatctacaacatctctgaaggttacaacatcaacaacctgaaagttaacttccgtg


 


gtcagaacgctaacctgaacccgcgtatcatcaccccgatcaccggtcgtggtctggttaaaaaaatc


 


atccgtttcTGCCACAAAGCGATTGATGGCCGCTCTCTCTATAACAAAACGCTGGATTGCatcgaaat


 


caacaacggtgaactgttcttcgttgcttctgaaaactcttacaacgacgacaacatcaacaccccga


 


aagaaatcgacgacaccgttacctctaacaacaactacgaaaacgacctggaccaggttatcctgaac


 


ttcaactctgaatctgctccgggtctgtctgacgaaaaactgaacctgaccatccagaacgacgctta


 


catcccgaaatacgactctaacggtacctctgacatcgaacagcacgacgttaacgaactgaacgttt


 


tcttctacctggacgctcagaaagttccggaaggtgaaaacaacgttaacctgacctcttctatcgac


 


accgctctgctggaacagccgaaaatctacaccttcttctcttctgagttcatcaacaacgttaacaa


 


accggttcaggctgctctgttcgtttcttggattcagcaggttctggttgacttcaccaccgaagcta


 


accagaaatctaccgttgacaaaatcgctgacatctctatcgttgttccgtacatcggtctggctctg


 


aacatcggtaacgaagctcagaaaggtaacttcaaagacgctctggaactgctgggtgctggtatcct


 


gctggagttcgaaccggaactgctgatcccgaccatcctggttttcaccatcaaatctttcctgggtt


 


cttctgacaacaaaaacaaagttatcaaagctatcaacaacgctctgaaagaacgtgacgaaaaatgg


 


aaagaagtttactctttcatcgtttctaactggatgaccaaaatcaacacccagttcaacaaacgtaa


 


agaacagatgtaccaggctctccagaaccaggttaacgctatcaaaaccatcatcgaatctaaataca


 


actcttacaccctggaagaaaaaaacgaactgaccaacaaatacgacatcaaacagatcgaaaacgaa


 


ctgaaccagaaagtttctatcgctatgaacaacatcgaccgtttcctgaccgaatcttctatctctta


 


cctgatgaaactcatcaacgaagttaaaatcaacaaactgcgtgaatacgacgaaaacgttaaaacct


 


acctgctgaactacatcatccagcacggttctatcctgggtgaatctcagcaggaactgaactctatg


 


gttaccgacaccctgaacaactctatcccgttcaaactgtcttcttacaccgacgacaaaatcctGAT


 


CTCTTACTTCAACAAATTCTTTAAAcgcATTAAGAGTTCATCGGTTctgaatATGCGGTACAAAAATG


 


ATAAAtatGTCGATACTTCTGGATATgatAGCAATATCAACATTAACGGCGACGTGTATAAATATccg


 


ACAAATAAAAACCAGTTTGGGATATATAACGACAAGctgTCGGAGGTCAATattTCTCAAAACGACta


 


tATCattTACGATAATaaaTATAAAAACTTTAGCATTAGTtttTGGGTTcgtATACCTAATtatGACA


 


ATaaaattGTAAATGTGAATAACGAGTATACCATTATAAACTGTATGcgcGACAATAACAGTGGTTGG


 


AAGGTATCGctgAACCATAATGAGATTATCTGGACCctgcagGATAATgcaGGTATAAACCAGAAACT


 


GGCTTTTAACTATGGAAACGCAAATGGGATCTCAGATTACATTaataaaTGGatttttGTTaccATTA


 


CGAACGATcgcTTAGGCGACTCAAAACTTTATATTAATggcAATctgATAGATCAGAAATCAATCTTA


 


AATTTGGGCAATATTCATGTCTCTgatAACATCTTGTTCAAGATCGTTAATTGCAGTTACACTcgtTA


 


TATTGGCATTCGTTACTTTAATATCTTCgataaaGAActgGACGAGACGGAAATCcagACTCTGTATT


 


CAAACGAGCCCAATACTAATATATTGAAAGATTTTTGGGGTAACTATCTTTTATATGATAAAGAATAC


 


TATCTCCTGaatGTATTGAAGCCAAACAATTTCATAGATAGACGCAAGGATAGCACATTAAGTATCAA


 


CAATATCAGATCTACTATActgttaGCAAATCGCCTcTACTCCggtATTAAAGTGAAGATTcagCGGG


 


TTAATAACTCCAGTACCAATGATAATCTGGTCCGTAAGAACGATCAGGTATACATCaatTTCGTCGCG


 


AGCAAAACTcatCTCTTCCCGCTTTACGCCgatACAGCTACGACAAACAAGGAAAAAACCATAAAAAT


 


TTCCAGCTCCGGAAACAGATTCAATCAAGTAGTTGTAATGAACTCTGTGGGTaatAATTGTACGATGA


 


ACTTTaagAATAACAATGGGAACAATattGGACTTTTGGGCTTcAAAGCCGACACAGTGGTGGCGTCC


 


ACCTGGTATTACACGcacATGcggGACCATACGAATTCGAACGGTTGCTTCTGGAACTTTATCTCGGA


 


AgaaCACGGGTGGCAAGAAAAA


 


(Polypeptide Sequence of BoNT/E with a C1 Activation Loop)


SEQ ID NO: 11



MPKINSFNYNDPVNDRTILYIKPGGCQEFYKSFNIMKNIWIIPERNVIGTTPQDFHPPTSLKNGDSSY



 


YDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELSKANPYLGNDNTPDNQFHIGDASAVEIKF


 


SNGSQDILLPNVIIMGAEPDLFETNSSNISLRNNYMPSNHGFGSIAIVTFSPEYSFRFNDNSMNEFIQ


 


DPALTLMHQLIYSLHGLYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIITSAQSNDIY


 


TNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINKFNDIFKKLYSFTEFDLA


 


TKFQVKCRQTYIGQYKYFKLSNLLNDSIYNISEGYNINNLKVNFRGQNANLNPRIITPITGRGLVKKI


 


IRFCHKAIDGRSLYNKTLDCIEINNGELFFVASENSYNDDNINTPKEIDDTVTSNNNYENDLDQVILN


 


FNSESAPGLSDEKLNLTIQNDAYIPKYDSNGTSDIEQHDVNELNVFFYLDAQKVPEGENNVNLTSSID


 


TALLEQPKIYTFFSSEFINNVNKPVQAALFVSWIQQVLVDFTTEANQKSTVDKIADISIVVPYIGLAL


 


NIGNEAQKGNFKDALELLGAGILLEFEPELLIPTILVFTIKSFLGSSDNKNKVIKAINNALKERDEKW


 


KEVYSFIVSNWMTKINTQFNKRKEQMYQALQNQVNAIKTIIESKYNSYTLEEKNELTNKYDIKQIENE


 


LNQKVSIAMNNIDRFLTESSISYLMKLINEVKINKLREYDENVKTYLLNYIIQHGSILGESQQELNSM


 


VTDTLNNSIPFKLSSYTDDKILISYFNKFFKRIKSSSVLNMRYKNDKYVDTSGYDSNININGDVYKYP


 


TNKNQFGIYNDKLSEVNISQNDYIIYDNKYKNFSISFWVRIPNYDNKIVNVNNEYTIINCMRDNNSGW


 


KVSLNHNEIIWTLQDNAGINQKLAFNYGNANGISDYINKWIFVTITNDRLGDSKLYINGNLIDQKSIL


 


NLGNIHVSDNILFKIVNCSYTRYIGIRYFNIFDKELDETEIQTLYSNEPNTNILKDFWGNYLLYDKEY


 


YLLNVLKPNNFIDRRKDSTLSINNIRSTILLANRLYSGIKVKIQRVNNSSTNDNLVRKNDQVYINFVA


 


SKTHLFPLYADTATTNKEKTIKISSSGNRFNQVVVMNSVGNNCTMNFKNNNGNNIGLLGFKADTVVAS


 


TWYYTHMRDHTNSNGCFWNFISEEHGWQEK.


 


(Nucleotide Sequence of BoNT/A1C1 with a C1 Activation Loop)


SEQ ID NO: 12



ATGCCATTCGTCAACAAGCAATTCAACTACAAAGACCCAGTCAACGGCGTCGACATCGCATACATCAA



 


GATTCCGAACGCCGGTCAAATGCAGCCGGTTAAGGCTTTTAAGATCCACAACAAGATTTGGGTTATCC


 


CGGAGCGTGACACCTTCACGAACCCGGAAGAAGGCGATCTGAACCCGCCACCGGAAGCGAAGCAAGTC


 


CCTGTCAGCTACTACGATTCGACGTACCTGAGCACGGATAACGAAAAAGATAACTACCTGAAAGGTGT


 


GACCAAGCTGTTCGAACGTATCTACAGCACGGATCTGGGTCGCATGCTGCTGACTAGCATTGTTCGCG


 


GTATCCCGTTCTGGGGTGGTAGCACGATTGACACCGAACTGAAGGTTATCGACACTAACTGCATTAAC


 


GTTATTCAACCGGATGGTAGCTATCGTAGCGAAGAGCTGAATCTGGTCATCATTGGCCCGAGCGCAGA


 


CATTATCCAATTCGAGTGCAAGAGCTTTGGTCACGAGGTTCTGAATCTGACCCGCAATGGCTATGGTA


 


GCACCCAGTACATTCGTTTTTCGCCGGATTTTACCTTCGGCTTTGAAGAGAGCCTGGAGGTTGATACC


 


AATCCGTTGCTGGGTGCGGGCAAATTCGCTACCGATCCGGCTGTCACGCTGGCCCATgAACTGATCcA


 


CGCAGGCCACCGCCTGTACGGCATTGCCATCAACCCAAACCGTGTGTTCAAGGTTAATACGAATGCAT


 


ACTACGAGATGAGCGGCCTGGAAGTCAGCTTCGAAGAACTGCGCACCTTCGGTGGCCATGACGCTAAA


 


TTCATTGACAGCTTGCAAGAGAATGAGTTCCGTCTGTACTACTATAACAAATTCAAAGACATTGCAAG


 


CACGTTGAACAAGGCCAAAAGCATCGTTGGTACTACCGCGTCGTTGCAGTATATGAAGAATGTGTTTA


 


AAGAGAAGTACCTGCTGTCCGAGGATACCTCCGGCAAGTTTAGCGTTGATAAGCTGAAGTTTGACAAA


 


CTGTACAAGATGCTGACCGAGATTTACACCGAGGACAACTTTGTGAAATTCTTCAAAGTGTTGAATCG


 


TAAAACCTATCTGAATTTTGACAAAGCGGTTTTCAAGATTAACATCGTGCCGAAGGTGAACTACACCA


 


TCTATGACGGTTTTAACCTGCGTAACACCAACCTGGCGGCGAACTTTAACGGTCAGAATACGGAAATC


 


AACAACATGAATTTCACGAAGTTGAAGAACTTCACGGGTCTGTTCGAGTTCTATAAGCTGCTGTGCCA


 


CAAAGCGATTGATGGCCGCTCTCTCTATAACAAAACGCTGGATTGCATTAAGGTAAACAATTGGGATC


 


TGTTCTTTTCGCCATCCGAAGATAATTTTACCAACGACCTGAACAAGGGTGAAGAAATCACCAGCGAT


 


ACGAATATTGAAGCAGCGGAAGAGAATATCAGCCTGGATCTGATCCAGCAGTACTATCTGACCTTTAA


 


CTTCGACAATGAACCGGAGAACATTAGCATTGAGAATCTGAGCAGCGACATTATCGGTCAGCTGGAAC


 


TGATGCCGAATATCGAACGTTTCCCGAACGGCAAAAAGTACGAGCTGGACAAGTACACTATGTTCCAT


 


TACCTGCGTGCACAGGAGTTTGAACACGGTAAAAGCCGTATCGCGCTGACCAACAGCGTTAACGAGGC


 


CCTGCTGAACCCGAGCCGTGTCTATACCTTCTTCAGCAGCGACTATGTTAAGAAAGTGAACAAAGCCA


 


CTGAGGCCGCGATGTTCCTGGGCTGGGTGGAACAGCTGGTATATGACTTCACGGACGAGACGAGCGAA


 


GTGAGCACTACCGACAAAATTGCTGATATTACCATCATTATCCCGTATATTGGTCCGGCACTGAACAT


 


TGGCAACATGCTGTACAAAGACGATTTTGTGGGTGCCCTGATCTTCTCCGGTGCCGTGATTCTGCTGG


 


AGTTCATTCCGGAGATTGCGATCCCGGTGTTGGGTACCTTCGCGCTGGTGTCCTACATCGCGAATAAG


 


GTTCTGACGGTTCAGACCATCGATAACGCGCTGTCGAAACGTAATGAAAAATGGGACGAGGTTTACAA


 


ATACATTGTTACGAATTGGCTGGCGAAAGTCAATACCCAGATCGACCTGATCCGTAAGAAAATGAAAG


 


AGGCGCTGGAGAATCAGGCGGAGGCCACCAAAGCAATTATCAACTACCAATACAACCAGTACACGGAA


 


GAAGAGAAGAATAACATTAACTTCAATATCGATGATTTGAGCAGCAAGCTGAATGAATCTATCAACAA


 


AGCGATGATCAATATCAACAAGTTTTTGAATCAGTGTAGCGTTTCGTACCTGATGAATAGCATGATTC


 


CGTATGGCGTCAAACGTCTGGAGGACTTCGACGCCAGCCTGAAAGATGCGTTGCTGAAATACATTTAC


 


GACAATCGTGGTACGCTGATTGGCCAAGTTGACCGCTTGAAAGACAAAGTTAACAATACCCTGAGCAC


 


CGACATCCCATTTCAACTGAGCAAGTATGTTGATAATCAACGTCTGTTGAGCACTTTCACCGAGTATA


 


TCAAAAACATTAATGACAGCAAAATTCTGAGCCTGCAGAATCGTAAGAATACGCTGGTAGATACCAGT


 


GGATATAATGCGGAAGTCTCAGAAGAGGGTGATGTACAGCTGAACCCGATCTTTCCGTTCGACTTTAA


 


ACTGGGGTCTAGTGGTGAAGATCGCGGTAAAGTGATCGTTACCCAAAACGAGAACATTGTGTATAACA


 


GCATGTACGAGAGTTTCTCAATTTCTTTCTGGATTCGCATCAATAAATGGGTTTCTAATTTGCCTGGC


 


TATACCATCATTGATAGCGTCAAAAACAACTCGGGCTGGTCGATTGGCATTATTAGCAACTTTCTGGT


 


GTTTACCCTGAAACAGAATGAGGATTCGGAACAGAGCATTAACTTCTCCTACGACATCAGCAACAATG


 


CACCAGGGTATAACAAATGGTTCTTCGTAACGGTGACGAACAATATGATGGGCAATATGAAAATCTAC


 


ATTAACGGGAAACTTATCGACACCATTAAAGTGAAAGAGCTTACTGGGATCAATTTTAGTAAAACCAT


 


TACCTTTGAGATCAACAAAATTCCGGACACGGGTCTGATTACCTCCGATTCGGATAATATCAATATGT


 


GGATTCGCGACTTTTATATCTTCGCCAAAGAACTTGATGGCAAAGATATCAACATTTTGTTTAATTCC


 


CTGCAGTATACCAATGTCGTTAAGGACTATTGGGGCAATGATCTCCGCTACAATAAAGAATACTACAT


 


GGTTAACATCGACTATCTCAATCGCTACATGTATGCTAACTCGCGTCAAATTGTGTTTAACACACGTC


 


GTAACAACAACGATTTTAACGAAGGTTATAAAATCATTATCAAACGGATCCGCGGCAATACGAACGAT


 


ACTCGTGTTCGTGGCGGTGACATTCTGTATTTCGACATGACGATTAATAATAAAGCGTACAATCTGTT


 


CATGAAGAACGAAACCATGTACGCCGATAACCATTCCACTGAAGATATCTACGCAATCGGACTTCGCG


 


AACAGACCAAAGACATTAACGACAACATCATCTTTCAGATTCAACCGATGAATAATACCTACTACTAT


 


GCCTCCCAGATCTTCAAAAGTAATTTCAACGGCGAAAACATTTCAGGCATTTGCTCAATCGGCACTTA


 


TCGGTTCCGGTTAGGTGGTGATTGGTATCGTCACAACTACCTTGTTCCCACAGTGAAACAAGGCAACT


 


ATGCATCGCTCTTAGAAAGCACATCTACGCATTGGGGTTTTGTGCCAGTCAGTGAATAA


 


(Polypeptide Sequence of BoNT/A1C1 with a C1 Activation Loop)


SEQ ID NO: 13



MPFVNKQFNYKDPVNGVDIAYIKIPNAGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQV



 


PVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCIN


 


VIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDT


 


NPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAK


 


FIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDK


 


LYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFNGQNTEI


 


NNMNFTKLKNFTGLFEFYKLLCHKAIDGRSLYNKTLDCIKVNNWDLFFSPSEDNFTNDLNKGEEITSD


 


TNIEAAEENISLDLIQQYYLTFNFDNEPENISIENLSSDIIGQLELMPNIERFPNGKKYELDKYTMFH


 


YLRAQEFEHGKSRIALTNSVNEALLNPSRVYTFFSSDYVKKVNKATEAAMFLGWVEQLVYDFTDETSE


 


VSTTDKIADITIIIPYIGPALNIGNMLYKDDFVGALIFSGAVILLEFIPEIAIPVLGTFALVSYIANK


 


VLTVQTIDNALSKRNEKWDEVYKYIVTNWLAKVNTQIDLIRKKMKEALENQAEATKAIINYQYNQYTE


 


EEKNNINFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDALLKYIY


 


DNRGTLIGQVDRLKDKVNNTLSTDIPFQLSKYVDNQRLLSTFTEYIKNINDSKILSLQNRKNTLVDTS


 


GYNAEVSEEGDVQLNPIFPFDFKLGSSGEDRGKVIVTQNENIVYNSMYESFSISFWIRINKWVSNLPG


 


YTIIDSVKNNSGWSIGIISNFLVFTLKQNEDSEQSINFSYDISNNAPGYNKWFFVTVTNNMMGNMKIY


 


INGKLIDTIKVKELTGINFSKTITFEINKIPDTGLITSDSDNINMWIRDFYIFAKELDGKDINILFNS


 


LQYTNVVKDYWGNDLRYNKEYYMVNIDYLNRYMYANSRQIVFNTRRNNNDFNEGYKIIIKRIRGNTND


 


TRVRGGDILYFDMTINNKAYNLFMKNETMYADNHSTEDIYAIGLREQTKDINDNIIFQIQPMNNTYYY


 


ASQIFKSNFNGENISGICSIGTYRFRLGGDWYRHNYLVPTVKQGNYASLLESTSTHWGFVPVSE


 


(Nucleotide Sequence of BoNT/C1(0) (Endonedative))


SEQ ID NO: 14



ATGCCGATCACGATTAATAATTTCAACTATAGCGATCCGGTGGACAATAAGAATATTCTGTATCTGGA



 


TACTCATCTGAATACGCTGGCTAACGAACCGGAGAAAGCGTTCCGCATCACAGGCAACATCTGGGTTA


 


TTCCCGATCGCTTTTCACGCAACAGCAACCCTAATCTGAACAAACCTCCTCGTGTCACCAGTCCTAAA


 


TCCGGTTATTACGACCCAAACTATCTGAGTACGGATAGCGATAAAGATCCCTTTCTGAAAGAGATCAT


 


TAAGCTGTTCAAACGCATTAACTCTCGCGAAATTGGGGAAGAGCTGATCTATCGGCTTTCGACAGATA


 


TCCCGTTCCCAGGTAACAATAATACCCCGATTAATACTTTCGACTTTGATGTTGATTTCAATTCTGTG


 


GATGTGAAAACGCGTCAAGGCAATAATTGGGTGAAAACTGGTAGCATTAACCCGAGTGTAATTATCAC


 


AGGTCCCCGTGAGAACATCATCGACCCGGAAACCTCTACCTTCAAGCTGACGAACAACACGTTTGCTG


 


CACAGGAAGGGTTTGGTGCCCTGTCAATCATTTCCATCTCACCGCGTTTCATGTTAACCTACTCCAAT


 


GCCACAAATGATGTTGGCGAAGGACGTTTTAGCAAATCAGAATTTTGCATGGACCCAATTCTCATTCT


 


GATGggCacGCTGAACaATGCGATGCACAACTTGTATGGCATTGCTATTCCAAACGATCAAACCATTA


 


GCTCCGTTACCAGTAATATCTTCTATAGCCAGTATAATGTCAAATTGGAGTATGCCGAAATTTACGCC


 


TTTGGAGGCCCGACCATTGACCTGATTCCGAAATCTGCACGCAAATACTTCGAAGAAAAGGCGTTAGA


 


TTACTATCGCAGCATCGCGAAACGCCTGAACTCGATTACCACGGCCAATCCGTCGTCGTTCAACAAAT


 


ACATTGGTGAATATAAACAGAAACTGATTCGCAAATATCGGTTTGTCGTAGAAAGCTCTGGTGAAGTG


 


ACTGTAAACCGCAACAAATTTGTCGAACTCTACAACGAGTTGACCCAAATCTTTACCGAGTTTAACTA


 


CGCAAAGATCTATAACGTACAGAACCGCAAGATTTATCTTAGCAATGTATACACACCGGTTACTGCGA


 


ACATCTTAGACGACAATGTGTATGATATTCAGAATGGCTTTAACATCCCGAAATCAAATCTGAACGTT


 


CTGTTTATGGGCCAGAACCTGAGTCGTAATCCAGCACTGCGTAAAGTGAACCCGGAAAATATGCTCTA


 


CTTGTTTACCAAATTTTGCCACAAAGCGATTGATGGCCGCTCTCTCTATAACAAAACGCTGGATTGTC


 


GTGAGTTACTTGTGAAGAACACTGATTTACCGTTCATTGGGGATATCTCCGACGTGAAAACCGATATC


 


TTCCTGCGCAAAGACATTAATGAAGAAACGGAAGTCATCTATTACCCCGACAATGTGAGCGTTGATCA


 


GGTCATTTTATCGAAGAACACCTCCGAACATGGTCAGTTGGATTTGCTGTACCCTAGCATTGACTCGG


 


AGAGTGAAATCCTTCCGGGCGAAAATCAAGTGTTTTACGACAACCGTACCCAAAATGTTGATTATTTG


 


AATTCTTATTACTACCTGGAATCTCAGAAATTGAGCGACAATGTGGAAGATTTCACGTTCACACGCTC


 


CATTGAGGAAGCGCTGGATAATAGCGCGAAAGTGTATACGTATTTCCCTACCTTGGCGAATAAAGTAA


 


ATGCTGGTGTCCAGGGAGGCTTATTTCTGATGTGGGCGAATGATGTGGTAGAAGATTTTACGACCAAT


 


ATTTTGCGTAAGGACACCTTAGATAAAATTAGCGATGTTAGCGCCATCATCCCCTATATTGGCCCAGC


 


ACTGAATATCTCGAACTCTGTGCGTCGCGGAAACTTCACCGAAGCATTTGCGGTGACCGGGGTTACTA


 


TTCTGTTGGAAGCCTTTCCGGAGTTTACTATTCCGGCGCTGGGTGCGTTTGTGATTTATTCGAAAGTA


 


CAAGAACGCAATGAAATTATCAAAACCATCGATAATTGCCTGGAACAACGCATTAAACGCTGGAAGGA


 


TTCTTATGAATGGATGATGGGCACCTGGTTATCCCGTATTATCACACAGTTTAACAACATCTCGTATC


 


AGATGTACGATTCACTGAACTACCAAGCAGGGGCGATCAAAGCCAAGATCGACTTAGAATACAAGAAA


 


TATTCAGGTAGCGATAAAGAGAATATTAAAAGCCAGGTTGAAAACCTGAAGAACTCTCTGGATGTCAA


 


AATTTCAGAGGCTATGAACAACATTAACAAATTTATCCGCGAATGTAGCGTCACGTATCTGTTTAAAA


 


ACATGCTCCCGAAAGTGATTGATGAGCTCAACGAGTTTGATCGCAACACAAAGGCCAAACTGATTAAC


 


CTGATTGATAGTCACAATATTATTTTAGTCGGTGAAGTTGACAAGCTGAAGGCTAAGGTCAATAACAG


 


CTTTCAGAACACTATTCCGTTTAATATTTTCTCCTATACGAACAATAGTCTGCTGAAAGACATTATCA


 


ACGAATACTTCAACAATATTAATGACAGCAAAATTCTGAGCCTGCAGAATCGTAAGAATACGCTGGTA


 


GATACCAGTGGATATAATGCGGAAGTCTCAGAAGAGGGTGATGTACAGCTGAACCCGATCTTTCCGTT


 


CGACTTTAAACTGGGGTCTAGTGGTGAAGATCGCGGTAAAGTGATCGTTACCCAAAACGAGAACATTG


 


TGTATAACAGCATGTACGAGAGTTTCTCAATTTCTTTCTGGATTCGCATCAATAAATGGGTTTCTAAT


 


TTGCCTGGCTATACCATCATTGATAGCGTCAAAAACAACTCGGGCTGGTCGATTGGCATTATTAGCAA


 


CTTTCTGGTGTTTACCCTGAAACAGAATGAGGATTCGGAACAGAGCATTAACTTCTCCTACGACATCA


 


GCAACAATGCACCAGGGTATAACAAATGGTTCTTCGTAACGGTGACGAACAATATGATGGGCAATATG


 


AAAATCTACATTAACGGGAAACTTATCGACACCATTAAAGTGAAAGAGCTTACTGGGATCAATTTTAG


 


TAAAACCATTACCTTTGAGATCAACAAAATTCCGGACACGGGTCTGATTACCTCCGATTCGGATAATA


 


TCAATATGTGGATTCGCGACTTTTATATCTTCGCCAAAGAACTTGATGGCAAAGATATCAACATTTTG


 


TTTAATTCCCTGCAGTATACCAATGTCGTTAAGGACTATTGGGGCAATGATCTCCGCTACAATAAAGA


 


ATACTACATGGTTAACATCGACTATCTCAATCGCTACATGTATGCTAACTCGCGTCAAATTGTGTTTA


 


ACACACGTCGTAACAACAACGATTTTAACGAAGGTTATAAAATCATTATCAAACGGATCCGCGGCAAT


 


ACGAACGATACTCGTGTTCGTGGCGGTGACATTCTGTATTTCGACATGACGATTAATAATAAAGCGTA


 


CAATCTGTTCATGAAGAACGAAACCATGTACGCCGATAACCATTCCACTGAAGATATCTACGCAATCG


 


GACTTCGCGAACAGACCAAAGACATTAACGACAACATCATCTTTCAGATTCAACCGATGAATAATACC


 


TACTACTATGCCTCCCAGATCTTCAAAAGTAATTTCAACGGCGAAAACATTTCAGGCATTTGCTCAAT


 


CGGCACTTATCGGTTCCGGTTAGGTGGTGATTGGTATCGTCACAACTACCTTGTTCCCACAGTGAAAC


 


AAGGCAACTATGCATCGCTCTTAGAAAGCACATCTACGCATTGGGGTTTTGTGCCAGTCAGTGAAtaa


 


tg


 


(Polypeptide Sequence of BoNT/C1(0) (Endoneqative))


SEQ ID NO: 15



MPITINNFNYSDPVDNKNILYLDTHLNTLANEPEKAFRITGNIWVIPDRFSRNSNPNLNKPPRVTSPK



 


SGYYDPNYLSTDSDKDPFLKEIIKLFKRINSREIGEELIYRLSTDIPFPGNNNTPINTFDFDVDFNSV


 


DVKTRQGNNWVKTGSINPSVIITGPRENIIDPETSTFKLTNNTFAAQEGFGALSIISISPRFMLTYSN


 


ATNDVGEGRFSKSEFCMDPILILMGTLNNAMHNLYGIAIPNDQTISSVTSNIFYSQYNVKLEYAEIYA


 


FGGPTIDLIPKSARKYFEEKALDYYRSIAKRLNSITTANPSSFNKYIGEYKQKLIRKYRFVVESSGEV


 


TVNRNKFVELYNELTQIFTEFNYAKIYNVQNRKIYLSNVYTPVTANILDDNVYDIQNGFNIPKSNLNV


 


LFMGQNLSRNPALRKVNPENMLYLFTKFCHKAIDGRSLYNKTLDCRELLVKNTDLPFIGDISDVKTDI


 


FLRKDINEETEVIYYPDNVSVDQVILSKNTSEHGQLDLLYPSIDSESEILPGENQVFYDNRTQNVDYL


 


NSYYYLESQKLSDNVEDFTFTRSIEEALDNSAKVYTYFPTLANKVNAGVQGGLFLMWANDVVEDFTTN


 


ILRKDTLDKISDVSAIIPYIGPALNISNSVRRGNFTEAFAVTGVTILLEAFPEFTIPALGAFVIYSKV


 


QERNEIIKTIDNCLEQRIKRWKDSYEWMMGTWLSRIITQFNNISYQMYDSLNYQAGAIKAKIDLEYKK


 


YSGSDKENIKSQVENLKNSLDVKISEAMNNINKFIRECSVTYLFKNMLPKVIDELNEFDRNTKAKLIN


 


LIDSHNIILVGEVDKLKAKVNNSFQNTIPFNIFSYTNNSLLKDIINEYFNNINDSKILSLQNRKNTLV


 


DTSGYNAEVSEEGDVQLNPIFPFDFKLGSSGEDRGKVIVTQNENIVYNSMYESFSISFWIRINKWVSN


 


LPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNEDSEQSINFSYDISNNAPGYNKWFFVTVTNNMMGNM


 


KIYINGKLIDTIKVKELTGINFSKTITFEINKIPDTGLITSDSDNINMWIRDFYIFAKELDGKDINIL


 


FNSLQYTNVVKDYWGNDLRYNKEYYMVNIDYLNRYMYANSRQIVFNTRRNNNDFNEGYKIIIKRIRGN


 


TNDTRVRGGDILYFDMTINNKAYNLFMKNETMYADNHSTEDIYAIGLREQTKDINDNIIFQIQPMNNT


 


YYYASQIFKSNFNGENISGICSIGTYRFRLGGDWYRHNYLVPTVKQGNYASLLESTSTHWGFVPVSE


 


(Nucleotide Sequence of BoNT/C1)


SEQ ID NO: 16



ATGCCGATCACGATTAATAATTTCAACTATAGCGATCCGGTGGACAATAAGAATATTCTGTATCTGGA



 


TACTCATCTGAATACGCTGGCTAACGAACCGGAGAAAGCGTTCCGCATCACAGGCAACATCTGGGTTA


 


TTCCCGATCGCTTTTCACGCAACAGCAACCCTAATCTGAACAAACCTCCTCGTGTCACCAGTCCTAAA


 


TCCGGTTATTACGACCCAAACTATCTGAGTACGGATAGCGATAAAGATCCCTTTCTGAAAGAGATCAT


 


TAAGCTGTTCAAACGCATTAACTCTCGCGAAATTGGGGAAGAGCTGATCTATCGGCTTTCGACAGATA


 


TCCCGTTCCCAGGTAACAATAATACCCCGATTAATACTTTCGACTTTGATGTTGATTTCAATTCTGTG


 


GATGTGAAAACGCGTCAAGGCAATAATTGGGTGAAAACTGGTAGCATTAACCCGAGTGTAATTATCAC


 


AGGTCCCCGTGAGAACATCATCGACCCGGAAACCTCTACCTTCAAGCTGACGAACAACACGTTTGCTG


 


CACAGGAAGGGTTTGGTGCCCTGTCAATCATTTCCATCTCACCGCGTTTCATGTTAACCTACTCCAAT


 


GCCACAAATGATGTTGGCGAAGGACGTTTTAGCAAATCAGAATTTTGCATGGACCCAATTCTCATTCT


 


GATGCACGAGCTGAACCATGCGATGCACAACTTGTATGGCATTGCTATTCCAAACGATCAAACCATTA


 


GCTCCGTTACCAGTAATATCTTCTATAGCCAGTATAATGTCAAATTGGAGTATGCCGAAATTTACGCC


 


TTTGGAGGCCCGACCATTGACCTGATTCCGAAATCTGCACGCAAATACTTCGAAGAAAAGGCGTTAGA


 


TTACTATCGCAGCATCGCGAAACGCCTGAACTCGATTACCACGGCCAATCCGTCGTCGTTCAACAAAT


 


ACATTGGTGAATATAAACAGAAACTGATTCGCAAATATCGGTTTGTCGTAGAAAGCTCTGGTGAAGTG


 


ACTGTAAACCGCAACAAATTTGTCGAACTCTACAACGAGTTGACCCAAATCTTTACCGAGTTTAACTA


 


CGCAAAGATCTATAACGTACAGAACCGCAAGATTTATCTTAGCAATGTATACACACCGGTTACTGCGA


 


ACATCTTAGACGACAATGTGTATGATATTCAGAATGGCTTTAACATCCCGAAATCAAATCTGAACGTT


 


CTGTTTATGGGCCAGAACCTGAGTCGTAATCCAGCACTGCGTAAAGTGAACCCGGAAAATATGCTCTA


 


CTTGTTTACCAAATTTTGCCACAAAGCGATTGATGGCCGCTCTCTCTATAACAAAACGCTGGATTGTC


 


GTGAGTTACTTGTGAAGAACACTGATTTACCGTTCATTGGGGATATCTCCGACGTGAAAACCGATATC


 


TTCCTGCGCAAAGACATTAATGAAGAAACGGAAGTCATCTATTACCCCGACAATGTGAGCGTTGATCA


 


GGTCATTTTATCGAAGAACACCTCCGAACATGGTCAGTTGGATTTGCTGTACCCTAGCATTGACTCGG


 


AGAGTGAAATCCTTCCGGGCGAAAATCAAGTGTTTTACGACAACCGTACCCAAAATGTTGATTATTTG


 


AATTCTTATTACTACCTGGAATCTCAGAAATTGAGCGACAATGTGGAAGATTTCACGTTCACACGCTC


 


CATTGAGGAAGCGCTGGATAATAGCGCGAAAGTGTATACGTATTTCCCTACCTTGGCGAATAAAGTAA


 


ATGCTGGTGTCCAGGGAGGCTTATTTCTGATGTGGGCGAATGATGTGGTAGAAGATTTTACGACCAAT


 


ATTTTGCGTAAGGACACCTTAGATAAAATTAGCGATGTTAGCGCCATCATCCCCTATATTGGCCCAGC


 


ACTGAATATCTCGAACTCTGTGCGTCGCGGAAACTTCACCGAAGCATTTGCGGTGACCGGGGTTACTA


 


TTCTGTTGGAAGCCTTTCCGGAGTTTACTATTCCGGCGCTGGGTGCGTTTGTGATTTATTCGAAAGTA


 


CAAGAACGCAATGAAATTATCAAAACCATCGATAATTGCCTGGAACAACGCATTAAACGCTGGAAGGA


 


TTCTTATGAATGGATGATGGGCACCTGGTTATCCCGTATTATCACACAGTTTAACAACATCTCGTATC


 


AGATGTACGATTCACTGAACTACCAAGCAGGGGCGATCAAAGCCAAGATCGACTTAGAATACAAGAAA


 


TATTCAGGTAGCGATAAAGAGAATATTAAAAGCCAGGTTGAAAACCTGAAGAACTCTCTGGATGTCAA


 


AATTTCAGAGGCTATGAACAACATTAACAAATTTATCCGCGAATGTAGCGTCACGTATCTGTTTAAAA


 


ACATGCTCCCGAAAGTGATTGATGAGCTCAACGAGTTTGATCGCAACACAAAGGCCAAACTGATTAAC


 


CTGATTGATAGTCACAATATTATTTTAGTCGGTGAAGTTGACAAGCTGAAGGCTAAGGTCAATAACAG


 


CTTTCAGAACACTATTCCGTTTAATATTTTCTCCTATACGAACAATAGTCTGCTGAAAGACATTATCA


 


ACGAATACTTCAACAATATTAATGACAGCAAAATTCTGAGCCTGCAGAATCGTAAGAATACGCTGGTA


 


GATACCAGTGGATATAATGCGGAAGTCTCAGAAGAGGGTGATGTACAGCTGAACCCGATCTTTCCGTT


 


CGACTTTAAACTGGGGTCTAGTGGTGAAGATCGCGGTAAAGTGATCGTTACCCAAAACGAGAACATTG


 


TGTATAACAGCATGTACGAGAGTTTCTCAATTTCTTTCTGGATTCGCATCAATAAATGGGTTTCTAAT


 


TTGCCTGGCTATACCATCATTGATAGCGTCAAAAACAACTCGGGCTGGTCGATTGGCATTATTAGCAA


 


CTTTCTGGTGTTTACCCTGAAACAGAATGAGGATTCGGAACAGAGCATTAACTTCTCCTACGACATCA


 


GCAACAATGCACCAGGGTATAACAAATGGTTCTTCGTAACGGTGACGAACAATATGATGGGCAATATG


 


AAAATCTACATTAACGGGAAACTTATCGACACCATTAAAGTGAAAGAGCTTACTGGGATCAATTTTAG


 


TAAAACCATTACCTTTGAGATCAACAAAATTCCGGACACGGGTCTGATTACCTCCGATTCGGATAATA


 


TCAATATGTGGATTCGCGACTTTTATATCTTCGCCAAAGAACTTGATGGCAAAGATATCAACATTTTG


 


TTTAATTCCCTGCAGTATACCAATGTCGTTAAGGACTATTGGGGCAATGATCTCCGCTACAATAAAGA


 


ATACTACATGGTTAACATCGACTATCTCAATCGCTACATGTATGCTAACTCGCGTCAAATTGTGTTTA


 


ACACACGTCGTAACAACAACGATTTTAACGAAGGTTATAAAATCATTATCAAACGGATCCGCGGCAAT


 


ACGAACGATACTCGTGTTCGTGGCGGTGACATTCTGTATTTCGACATGACGATTAATAATAAAGCGTA


 


CAATCTGTTCATGAAGAACGAAACCATGTACGCCGATAACCATTCCACTGAAGATATCTACGCAATCG


 


GACTTCGCGAACAGACCAAAGACATTAACGACAACATCATCTTTCAGATTCAACCGATGAATAATACC


 


TACTACTATGCCTCCCAGATCTTCAAAAGTAATTTCAACGGCGAAAACATTTCAGGCATTTGCTCAAT


 


CGGCACTTATCGGTTCCGGTTAGGTGGTGATTGGTATCGTCACAACTACCTTGTTCCCACAGTGAAAC


 


AAGGCAACTATGCATCGCTCTTAGAAAGCACATCTACGCATTGGGGTTTTGTGCCAGTCAGTGAAtaa


 


(Polypeptide Sequence of BoNT/C1)


SEQ ID NO: 17



MPITINNFNYSDPVDNKNILYLDTHLNTLANEPEKAFRITGNIWVIPDRFSRNSNPNLNKPPRVTSPK



 


SGYYDPNYLSTDSDKDPFLKEIIKLFKRINSREIGEELIYRLSTDIPFPGNNNTPINTFDFDVDFNSV


 


DVKTRQGNNWVKTGSINPSVIITGPRENIIDPETSTFKLTNNTFAAQEGFGALSIISISPRFMLTYSN


 


ATNDVGEGRFSKSEFCMDPILILMHELNHAMHNLYGIAIPNDQTISSVTSNIFYSQYNVKLEYAEIYA


 


FGGPTIDLIPKSARKYFEEKALDYYRSIAKRLNSITTANPSSFNKYIGEYKQKLIRKYRFVVESSGEV


 


TVNRNKFVELYNELTQIFTEFNYAKIYNVQNRKIYLSNVYTPVTANILDDNVYDIQNGFNIPKSNLNV


 


LFMGQNLSRNPALRKVNPENMLYLFTKFCHKAIDGRSLYNKTLDCRELLVKNTDLPFIGDISDVKTDI


 


FLRKDINEETEVIYYPDNVSVDQVILSKNTSEHGQLDLLYPSIDSESEILPGENQVFYDNRTQNVDYL


 


NSYYYLESQKLSDNVEDFTFTRSIEEALDNSAKVYTYFPTLANKVNAGVQGGLFLMWANDVVEDFTTN


 


ILRKDTLDKISDVSAIIPYIGPALNISNSVRRGNFTEAFAVTGVTILLEAFPEFTIPALGAFVIYSKV


 


QERNEIIKTIDNCLEQRIKRWKDSYEWMMGTWLSRIITQFNNISYQMYDSLNYQAGAIKAKIDLEYKK


 


YSGSDKENIKSQVENLKNSLDVKISEAMNNINKFIRECSVTYLFKNMLPKVIDELNEFDRNTKAKLIN


 


LIDSHNIILVGEVDKLKAKVNNSFQNTIPFNIFSYTNNSLLKDIINEYFNNINDSKILSLQNRKNTLV


 


DTSGYNAEVSEEGDVQLNPIFPFDFKLGSSGEDRGKVIVTQNENIVYNSMYESFSISFWIRINKWVSN


 


LPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNEDSEQSINFSYDISNNAPGYNKWFFVTVTNNMMGNM


 


KIYINGKLIDTIKVKELTGINFSKTITFEINKIPDTGLITSDSDNINMWIRDFYIFAKELDGKDINIL


 


FNSLQYTNVVKDYWGNDLRYNKEYYMVNIDYLNRYMYANSRQIVFNTRRNNNDFNEGYKIIIKRIRGN


 


TNDTRVRGGDILYFDMTINNKAYNLFMKNETMYADNHSTEDIYAIGLREQTKDINDNIIFQIQPMNNT


 


YYYASQIFKSNFNGENISGICSIGTYRFRLGGDWYRHNYLVPTVKQGNYASLLESTSTHWGFVPVSE


 


(Enterokinase and Factor Xa Cleavage Site)


SEQ ID NO: 18



IDGR



 


(Enterokinase and Factor Xa Cleavage Site Variant)


SEQ ID NO: 19



IEGR



 


(BoNT/X Activation Loop)


SEQ ID NO: 20



CPRNGLLYNAIYRNSKNYLNNIDLEDKKTTSKTNVSYPCSLLNGC



 


(BoNT/A1 & A6 Activation Loop)


SEQ ID NO: 21



CVRGIITSKTKSLDKGYNKALNDLC



 


(BoNT/B2, B3 & B6 Activation Loop)


SEQ ID NO: 22



CKSVRAPGIC



 


(BoNT/D Activation Loop)


SEQ ID NO: 23



CLRLTKNSRDDSTC



 


(BoNT/E1 to E5, E9 & E12 Activation Loop)


SEQ ID NO: 24



CKNIVSVKGIRKSIC



 


(BoNT/F1 and F6 Activation Loop)


SEQ ID NO: 25



CKSVIPRKGTKAPPRLC



 


(BoNT/F2 and F3 Activation Loop)


SEQ ID NO: 26



CKSIIPRKGTKQSPSLC



 


(BoNT/F4 Activation Loop)


SEQ ID NO: 27



CKSIIPRKGTKAPPRLC



 


(BoNT/F5 Activation Loop)


SEQ ID NO: 28



CLNSSFKKNTKKPLC



 


(BoNT/F7 Activation Loop)


SEQ ID NO: 29



CKSIVSKKGTKNSLC



 


(TeNT Activation Loop)


SEQ ID NO: 30



CKKIIPPTNIRENLYNRTASLTDLGGELC



 


(BoNT/G Activation Loop)


SEQ ID NO: 31



CKPVMYKNTGKSEQC



 


(Nucleotide Sequence of Wild-Type BoNT/X-10HT)


SEQ ID NO: 32



ATGAAACTGGAAATCAACAAATTCAACTACAACGATCCGATCGATGGCATTAATGTTATTACCATGCGTCCGCCT



 


CGTCATAGCGATAAAATCAATAAAGGTAAAGGTCCGTTCAAAGCCTTTCAGGTGATTAAAAACATTTGGATTGTG


 


CCGGAACGCTACAACTTTACCAATAATACCAACGATCTGAACATTCCGAGCGAACCGATTATGGAAGCAGATGCC


 


ATTTATAACCCGAACTATCTGAATACCCCGAGCGAAAAAGATGAATTTCTGCAGGGTGTTATCAAAGTGCTGGAA


 


CGCATTAAAAGCAAACCGGAAGGTGAAAAACTGCTGGAACTGATTAGCAGCAGCATTCCGCTGCCGCTGGTTAGC


 


AATGGTGCACTGACCCTGAGCGATAATGAAACCATTGCATATCAAGAGAACAACAACATTGTGAGCAATCTGCAG


 


GCAAACCTGGTTATTTATGGTCCGGGTCCTGATATTGCAAATAATGCAACCTATGGTCTGTATAGCACCCCGATT


 


AGTAATGGTGAAGGTACACTGAGCGAAGTTAGCTTTAGCCCGTTTTATCTGAAACCGTTTGATGAAAGCTATGGC


 


AATTATCGTAGCCTGGTGAATATCGTGAACAAATTCGTGAAACGTGAATTTGCACCTGATCCGGCAAGCACCCTG


 


ATGCATGAACTGGTTCATGTTACCCATAATCTGTATGGTATTAGCAACCGCAACTTCTACTATAACTTTGACACC


 


GGCAAAATTGAAACCAGCCGTCAGCAGAATAGCCTGATTTTTGAAGAACTGCTGACCTTTGGTGGCATTGATAGC


 


AAAGCAATTAGCAGCCTGATCATCAAGAAAATTATCGAAACCGCCAAGAACAACTATACCACGCTGATTAGCGAA


 


CGCCTGAATACCGTTACCGTTGAAAATGATCTGCTGAAATATATCAAAAACAAAATCCCGGTTCAGGGTCGTCTG


 


GGTAACTTTAAACTGGATACCGCAGAATTCGAGAAAAAGCTGAATACCATTCTGTTTGTGCTGAACGAAAGCAAT


 


CTGGCACAGCGTTTTAGCATTCTGGTTCGTAAACATTACCTGAAAGAACGTCCGATTGATCCGATTTATGTGAAC


 


ATTCTGGATGACAATAGCTACAGCACCCTGGAAGGTTTTAACATTAGCAGTCAGGGTAGCAATGATTTCCAAGGT


 


CAGCTGCTGGAAAGCAGCTATTTTGAAAAAATTGAAAGCAATGCCCTGCGTGCCTTCATTAAAATCTGTCCGCGT


 


AATGGTCTGCTGTATAATGCCATTTATCGCAACAGCAAAAACTACCTGAACAACATTGATCTGGAAGATAAAAAG


 


ACCACGAGCAAAACCAATGTTAGCTATCCGTGTAGCCTGCTGAATGGTTGTATTGAAGTTGAAAACAAAGACCTG


 


TTCCTGATTAGCAACAAAGATAGCCTGAACGATATTAACCTGAGCGAAGAAAAAATCAAACCGGAAACCACCGTG


 


TTCTTCAAAGATAAACTGCCTCCGCAGGATATTACGCTGAGCAATTATGATTTTACCGAAGCCAATAGCATTCCG


 


AGCATTAGCCAGCAGAACATTCTGGAACGTAATGAAGAACTGTATGAACCGATTCGCAATAGCCTGTTTGAAATC


 


AAAACCATCTATGTGGATAAGCTGACCACCTTTCATTTTCTGGAAGCCCAGAATATTGATGAGAGCATTGATAGC


 


AGCAAAATTCGTGTTGAACTGACCGATAGCGTTGATGAAGCACTGAGCAATCCGAATAAAGTTTATAGCCCGTTC


 


AAGAACATGAGCAACACCATTAATAGCATTGAAACCGGTATTACCAGCACCTACATCTTTTATCAGTGGCTGCGT


 


AGCATCGTGAAAGATTTTAGTGATGAAACCGGCAAAATCGACGTGATTGATAAAAGCAGCGATACCCTGGCAATT


 


GTTCCGTATATTGGTCCGCTGCTGAATATTGGTAATGATATTCGTCATGGCGATTTTGTGGGTGCAATTGAACTG


 


GCAGGCATTACCGCACTGCTGGAATATGTTCCGGAATTTACCATTCCGATTCTGGTTGGTCTGGAAGTTATTGGT


 


GGCGAACTGGCACGTGAACAGGTTGAAGCAATTGTTAATAATGCCCTGGATAAACGCGATCAGAAATGGGCAGAA


 


GTTTACAATATTACCAAAGCACAGTGGTGGGGCACCATTCATTTACAGATTAATACCCGTCTGGCCCATACCTAT


 


AAAGCCCTGAGCCGTCAGGCAAATGCCATTAAAATGAATATGGAATTTCAGCTGGCCAACTACAAAGGCAACATC


 


GATGATAAAGCCAAAATCAAAAACGCCATCAGCGAAACCGAAATCCTGCTGAACAAAAGCGTTGAACAGGCAATG


 


AAAAACACCGAGAAATTCATGATCAAACTGAGCAACAGCTATCTGACCAAAGAAATGATTCCGAAAGTGCAGGAT


 


AACCTGAAAAATTTCGATCTGGAAACCAAGAAAACCCTGGACAAATTTATCAAAGAGAAAGAGGACATTCTGGGC


 


ACCAATCTGAGCAGCAGCCTGCGTCGTAAAGTTAGCATTCGTCTGAATAAAAACATTGCCTTCGACATCAACGAT


 


ATCCCGTTTAGCGAATTTGATGATCTGATCAACCAGTACAAAAACGAGATCGAAGATTATGAAGTGCTGAATCTG


 


GGTGCAGAAGATGGGAAAATCAAAGATCTGAGCGGTACAACCAGCGATATCAATATTGGTTCAGATATCGAACTG


 


GCCGATGGTCGTGAAAATAAAGCCATTAAGATTAAAGGCAGCGAGAACAGCACCATCAAAATTGCAATGAACAAA


 


TATCTGCGTTTTAGCGCGACCGATAACTTTAGCATTAGCTTTTGGATCAAACATCCGAAACCGACCAATCTGCTT


 


AATAACGGTATTGAATATACCCTGGTCGAGAACTTTAATCAGCGTGGTTGGAAAATTAGCATCCAGGATAGCAAA


 


CTGATTTGGTATCTGCGCGATCACAATAACAGCATCAAAATCGTTACACCGGATTATATTGCGTTTAATGGCTGG


 


AACCTGATTACCATTACAAACAATCGTAGCAAAGGCAGCATTGTGTATGTGAACGGTAGCAAAATTGAAGAGAAG


 


GATATTAGCAGCATCTGGAATACCGAAGTGGATGATCCGATTATCTTTCGCCTGAAAAACAATCGCGATACCCAG


 


GCGTTTACCCTGCTGGATCAGTTTAGCATTTATCGGAAAGAACTGAACCAGAACGAAGTGGTGAAACTGTATAAC


 


TACTACTTCAACAGCAACTACATTCGCGATATTTGGGGTAATCCGCTGCAGTACAACAAAAAATACTATCTGCAG


 


ACCCAGGACAAACCTGGTAAAGGTCTGATCCGCGAATATTGGAGCAGCTTTGGTTATGATTATGTGATTCTGAGC


 


GATAGCAAGACGATTACCTTTCCGAATAATATCCGTTATGGTGCCCTGTATAACGGCAGCAAAGTTCTGATCAAA


 


AATAGCAAAAAACTGGATGGTCTGGTGCGCAATAAAGATTTCATTCAGCTGGAAATCGATGGCTATAATATGGGT


 


ATTAGCGCAGATCGCTTTAACGAGGATACCAACTATATTGGCACCACCTATGGTACAACCCATGATCTGACCACC


 


GATTTTGAAATTATTCAGCGCCAAGAGAAATACCGCAATTATTGTCAGCTGAAAACCCCGTATAACATCTTTCAT


 


AAAAGCGGTCTGATGAGCACCGAAACCAGCAAACCGACCTTTCATGATTATCGTGACTGGGTTTATAGCAGCGCA


 


TGGTATTTTCAGAACTATGAAAATCTGAACCTGCGCAAACATACCAAAACCAACTGGTATTTTATCCCGAAAGAT


 


GAAGGTTGGGATGAAGATCTTGAAGTTCTGTTTCAGGGTCCGCATCATCACCACCATCACCATCATCATCAC


 


(Polypeptide Sequence of BoNT/X)


SEQ ID NO: 33



MKLEINKFNYNDPIDGINVITMRPPRHSDKINKGKGPFKAFQVIKNIWIVPERYNFTNNT



 


NDLNIPSEPIMEADAIYNPNYLNTPSEKDEFLQGVIKVLERIKSKPEGEKLLELISSSIP


 


LPLVSNGALTLSDNETIAYQENNNIVSNLQANLVIYGPGPDIANNATYGLYSTPISNGEG


 


TLSEVSFSPFYLKPFDESYGNYRSLVNIVNKFVKREFAPDPASTLMHELVHVTHNLYGIS


 


NRNFYYNFDTGKIETSRQQNSLIFEELLTFGGIDSKAISSLIIKKIIETAKNNYTTLISE


 


RLNTVTVENDLLKYIKNKIPVQGRLGNFKLDTAEFEKKLNTILFVLNESNLAQRFSILVR


 


KHYLKERPIDPIYVNILDDNSYSTLEGFNISSQGSNDFQGQLLESSYFEKIESNALRAFI


 


KICPRNGLLYNAIYRNSKNYLNNIDLEDKKTTSKTNVSYPCSLLNGCIEVENKDLFLISN


 


KDSLNDINLSEEKIKPETTVFFKDKLPPQDITLSNYDFTEANSIPSISQQNILERNEELY


 


EPIRNSLFEIKTIYVDKLTTFHFLEAQNIDESIDSSKIRVELTDSVDEALSNPNKVYSPF


 


KNMSNTINSIETGITSTYIFYQWLRSIVKDFSDETGKIDVIDKSSDTLAIVPYIGPLLNI


 


GNDIRHGDFVGAIELAGITALLEYVPEFTIPILVGLEVIGGELAREQVEAIVNNALDKRD


 


QKWAEVYNITKAQWWGTIHLQINTRLAHTYKALSRQANAIKMNMEFQLANYKGNIDDKAK


 


IKNAISETEILLNKSVEQAMKNTEKFMIKLSNSYLTKEMIPKVQDNLKNFDLETKKTLDK


 


FIKEKEDILGTNLSSSLRRKVSIRLNKNIAFDINDIPFSEFDDLINQYKNEIEDYEVLNL


 


GAEDGKIKDLSGTTSDINIGSDIELADGRENKAIKIKGSENSTIKIAMNKYLRFSATDNF


 


SISFWIKHPKPTNLLNNGIEYTLVENFNQRGWKISIQDSKLIWYLRDHNNSIKIVTPDYI


 


AFNGWNLITITNNRSKGSIVYVNGSKIEEKDISSIWNTEVDDPIIFRLKNNRDTQAFTLL


 


DQFSIYRKELNQNEVVKLYNYYFNSNYIRDIWGNPLQYNKKYYLQTQDKPGKGLIREYWS


 


SFGYDYVILSDSKTITFPNNIRYGALYNGSKVLIKNSKKLDGLVRNKDFIQLEIDGYNMG


 


ISADRFNEDTNYIGTTYGTTHDLTTDFEIIQRQEKYRNYCQLKTPYNIFHKSGLMSTETS


 


KPTFHDYRDWVYSSAWYFQNYENLNLRKHTKTNWYFIPKDEGWDED


 


(Polypeptide Sequence of Wild-Type BoNT/X-10HT)


SEQ ID NO: 34



MKLEINKFNYNDPIDGINVITMRPPRHSDKINKGKGPFKAFQVIKNIWIVPERYNFTNNTNDLNIPSEPIMEADA



 


IYNPNYLNTPSEKDEFLQGVIKVLERIKSKPEGEKLLELISSSIPLPLVSNGALTLSDNETIAYQENNNIVSNLQ


 


ANLVIYGPGPDIANNATYGLYSTPISNGEGTLSEVSFSPFYLKPFDESYGNYRSLVNIVNKFVKREFAPDPASTL


 


MHELVHVTHNLYGISNRNFYYNFDTGKIETSRQQNSLIFEELLTFGGIDSKAISSLIIKKIIETAKNNYTTLISE


 


RLNTVTVENDLLKYIKNKIPVQGRLGNFKLDTAEFEKKLNTILFVLNESNLAQRFSILVRKHYLKERPIDPIYVN


 


ILDDNSYSTLEGFNISSQGSNDFQGQLLESSYFEKIESNALRAFIKICPRNGLLYNAIYRNSKNYLNNIDLEDKK


 


TTSKTNVSYPCSLLNGCIEVENKDLFLISNKDSLNDINLSEEKIKPETTVFFKDKLPPQDITLSNYDFTEANSIP


 


SISQQNILERNEELYEPIRNSLFEIKTIYVDKLTTFHFLEAQNIDESIDSSKIRVELTDSVDEALSNPNKVYSPF


 


KNMSNTINSIETGITSTYIFYQWLRSIVKDFSDETGKIDVIDKSSDTLAIVPYIGPLLNIGNDIRHGDFVGAIEL


 


AGITALLEYVPEFTIPILVGLEVIGGELAREQVEAIVNNALDKRDQKWAEVYNITKAQWWGTIHLQINTRLAHTY


 


KALSRQANAIKMNMEFQLANYKGNIDDKAKIKNAISETEILLNKSVEQAMKNTEKFMIKLSNSYLTKEMIPKVQD


 


NLKNEDLETKKTLDKFIKEKEDILGTNLSSSLRRKVSIRLNKNIAFDINDIPFSEFDDLINQYKNEIEDYEVLNL


 


GAEDGKIKDLSGTTSDINIGSDIELADGRENKAIKIKGSENSTIKIAMNKYLRFSATDNESISFWIKHPKPTNLL


 


NNGIEYTLVENFNQRGWKISIQDSKLIWYLRDHNNSIKIVTPDYIAFNGWNLITITNNRSKGSIVYVNGSKIEEK


 


DISSIWNTEVDDPIIFRLKNNRDTQAFTLLDQFSIYRKELNQNEVVKLYNYYFNSNYIRDIWGNPLQYNKKYYLQ


 


TQDKPGKGLIREYWSSFGYDYVILSDSKTITFPNNIRYGALYNGSKVLIKNSKKLDGLVRNKDFIQLEIDGYNMG


 


ISADRFNEDTNYIGTTYGTTHDLTTDFEIIQRQEKYRNYCQLKTPYNIFHKSGLMSTETSKPTFHDYRDWVYSSA


 


WYFQNYENLNLRKHTKTNWYFIPKDEGWDEDLEVLFQGPHHHHHHHHHH


 


(BoNT/A - UniProt P10845)


SEQ ID NO: 35



MPFVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLN



 


PPPEAKQVPVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGG


 


STIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNGY


 


GSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPN


 


RVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKA


 


KSIVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKV


 


LNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFT


 


GLFEFYKLLCVRGIITSKTKSLDKGYNKALNDLCIKVNNWDLFFSPSEDNFTNDLNKGEE


 


ITSDTNIEAAEENISLDLIQQYYLTFNFDNEPENISIENLSSDIIGQLELMPNIERFPNG


 


KKYELDKYTMFHYLRAQEFEHGKSRIALTNSVNEALLNPSRVYTFFSSDYVKKVNKATEA


 


AMFLGWVEQLVYDFTDETSEVSTTDKIADITIIIPYIGPALNIGNMLYKDDFVGALIFSG


 


AVILLEFIPEIAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLAK


 


VNTQIDLIRKKMKEALENQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNESINKA


 


MININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDALLKYIYDNRGTLIGQVDRLKDK


 


VNNTLSTDIPFQLSKYVDNQRLLSTFTEYIKNIINTSILNLRYESNHLIDLSRYASKINI


 


GSKVNFDPIDKNQIQLFNLESSKIEVILKNAIVYNSMYENFSTSFWIRIPKYFNSISLNN


 


EYTIINCMENNSGWKVSLNYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTIT


 


NNRLNNSKIYINGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYFNLFDKELN


 


EKEIKDLYDNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNKYVDVNNVGIRGYMYLKGPR


 


GSVMTTNIYLNSSLYRGTKFIIKKYASGNKDNIVRNNDRVYINVVVKNKEYRLATNASQA


 


GVEKILSALEIPDVGNLSQVVVMKSKNDQGITNKCKMNLQDNNGNDIGFIGFHQFNNIAK


 


LVASNWYNRQIERSSRTLGCSWEFIPVDDGWGERPL


 


(BoNT/B - UniProt P10844)


SEQ ID NO: 36



MPVTINNFNYNDPIDNNNIIMMEPPFARGTGRYYKAFKITDRIWIIPERYTFGYKPEDFN



 


KSSGIFNRDVCEYYDPDYLNTNDKKNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLG


 


DRRVPLEEFNTNIASVTVNKLISNPGEVERKKGIFANLIIFGPGPVLNENETIDIGIQNH


 


FASREGFGGIMQMKFCPEYVSVFNNVQENKGASIFNRRGYFSDPALILMHELIHVLHGLY


 


GIKVDDLPIVPNEKKFFMQSTDAIQAEELYTFGGQDPSIITPSTDKSIYDKVLQNFRGIV


 


DRLNKVLVCISDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLMFGFTETN


 


IAENYKIKTRASYFSDSLPPVKIKNLLDNEIYTIEEGFNISDKDMEKEYRGQNKAINKQA


 


YEEISKEHLAVYKIQMCKSVKAPGICIDVDNEDLFFIADKNSFSDDLSKNERIEYNTQSN


 


YIENDFPINELILDTDLISKIELPSENTESLTDFNVDVPVYEKQPAIKKIFTDENTIFQY


 


LYSQTFPLDIRDISLTSSFDDALLFSNKVYSFFSMDYIKTANKVVEAGLFAGWVKQIVND


 


FVIEANKSNTMDKIADISLIVPYIGLALNVGNETAKGNFENAFEIAGASILLEFIPELLI


 


PVVGAFLLESYIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTIKEGMY


 


KALNYQAQALEEIIKYRYNIYSEKEKSNINIDFNDINSKLNEGINQAIDNINNFINGCSV


 


SYLMKKMIPLAVEKLLDFDNTLKKNLLNYIDENKLYLIGSAEYEKSKVNKYLKTIMPFDL


 


SIYTNDTILIEMFNKYNSEILNNIILNLRYKDNNLIDLSGYGAKVEVYDGVELNDKNQFK


 


LTSSANSKIRVTQNQNIIFNSVFLDFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMKNNS


 


GWKISIRGNRIIWTLIDINGKTKSVFFEYNIREDISEYINRWFFVTITNNLNNAKIYING


 


KLESNTDIKDIREVIANGEIIFKLDGDIDRTQFIWMKYFSIFNTELSQSNIEERYKIQSY


 


SEYLKDFWGNPLMYNKEYYMFNAGNKNSYIKLKKDSPVGEILTRSKYNQNSKYINYRDLY


 


IGEKFIIRRKSNSQSINDDIVRKEDYIYLDFFNLNQEWRVYTYKYFKKEEEKLFLAPISD


 


SDEFYNTIQIKEYDEQPTYSCQLLFKKDEESTDEIGLIGIHRFYESGIVFEEYKDYFCIS


 


KWYLKEVKRKPYNLKLGCNWQFIPKDEGWTE


 


(BoNT/C - UniProt P18640)


SEQ ID NO: 37



MPITINNFNYSDPVDNKNILYLDTHLNTLANEPEKAFRITGNIWVIPDRFSRNSNPNLNK



 


PPRVTSPKSGYYDPNYLSTDSDKDPFLKEIIKLFKRINSREIGEELIYRLSTDIPFPGNN


 


NTPINTFDFDVDFNSVDVKTRQGNNWVKTGSINPSVIITGPRENIIDPETSTFKLTNNTF


 


AAQEGFGALSIISISPRFMLTYSNATNDVGEGRFSKSEFCMDPILILMHELNHAMHNLYG


 


IAIPNDQTISSVTSNIFYSQYNVKLEYAEIYAFGGPTIDLIPKSARKYFEEKALDYYRSI


 


AKRLNSITTANPSSFNKYIGEYKQKLIRKYRFVVESSGEVTVNRNKFVELYNELTQIFTE


 


FNYAKIYNVQNRKIYLSNVYTPVTANILDDNVYDIQNGFNIPKSNLNVLFMGQNLSRNPA


 


LRKVNPENMLYLFTKFCHKAIDGRSLYNKTLDCRELLVKNTDLPFIGDISDVKTDIFLRK


 


DINEETEVIYYPDNVSVDQVILSKNTSEHGQLDLLYPSIDSESEILPGENQVFYDNRTQN


 


VDYLNSYYYLESQKLSDNVEDFTFTRSIEEALDNSAKVYTYFPTLANKVNAGVQGGLFLM


 


WANDVVEDFTTNILRKDTLDKISDVSAIIPYIGPALNISNSVRRGNFTEAFAVTGVTILL


 


EAFPEFTIPALGAFVIYSKVQERNEIIKTIDNCLEQRIKRWKDSYEWMMGTWLSRIITQF


 


NNISYQMYDSLNYQAGAIKAKIDLEYKKYSGSDKENIKSQVENLKNSLDVKISEAMNNIN


 


KFIRECSVTYLFKNMLPKVIDELNEFDRNTKAKLINLIDSHNIILVGEVDKLKAKVNNSF


 


QNTIPFNIFSYTNNSLLKDIINEYFNNINDSKILSLQNRKNTLVDTSGYNAEVSEEGDVQ


 


LNPIFPFDFKLGSSGEDRGKVIVTQNENIVYNSMYESFSISFWIRINKWVSNLPGYTIID


 


SVKNNSGWSIGIISNFLVFTLKQNEDSEQSINFSYDISNNAPGYNKWFFVTVTNNMMGNM


 


KIYINGKLIDTIKVKELTGINFSKTITFEINKIPDTGLITSDSDNINMWIRDFYIFAKEL


 


DGKDINILFNSLQYTNVVKDYWGNDLRYNKEYYMVNIDYLNRYMYANSRQIVFNTRRNNN


 


DFNEGYKIIIKRIRGNTNDTRVRGGDILYFDMTINNKAYNLFMKNETMYADNHSTEDIYA


 


IGLREQTKDINDNIIFQIQPMNNTYYYASQIFKSNFNGENISGICSIGTYRFRLGGDWYR


 


HNYLVPTVKQGNYASLLESTSTHWGFVPVSE


 


(BoNT/D - UniProt P19321)


SEQ ID NO: 38



MTWPVKDFNYSDPVNDNDILYLRIPQNKLITTPVKAFMITQNIWVIPERFSSDTNPSLSK



 


PPRPTSKYQSYYDPSYLSTDEQKDTFLKGIIKLFKRINERDIGKKLINYLVVGSPFMGDS


 


STPEDTFDFTRHTTNIAVEKFENGSWKVTNIITPSVLIFGPLPNILDYTASLTLQGQQSN


 


PSFEGFGTLSILKVAPEFLLTFSDVTSNQSSAVLGKSIFCMDPVIALMHELTHSLHQLYG


 


INIPSDKRIRPQVSEGFFSQDGPNVQFEELYTFGGLDVEIIPQIERSQLREKALGHYKDI


 


AKRLNNINKTIPSSWISNIDKYKKIFSEKYNFDKDNTGNFVVNIDKFNSLYSDLTNVMSE


 


VVYSSQYNVKNRTHYFSRHYLPVFANILDDNIYTIRDGFNLTNKGFNIENSGQNIERNPA


 


LQKLSSESVVDLFTKVCLRLTKNSRDDSTCIKVKNNRLPYVADKDSISQEIFENKIITDE


 


TNVQNYSDKFSLDESILDGQVPINPEIVDPLLPNVNMEPLNLPGEEIVFYDDITKYVDYL


 


NSYYYLESQKLSNNVENITLTTSVEEALGYSNKIYTFLPSLAEKVNKGVQAGLFLNWANE


 


VVEDFTTNIMKKDTLDKISDVSVIIPYIGPALNIGNSALRGNFNQAFATAGVAFLLEGFP


 


EFTIPALGVFTFYSSIQEREKIIKTIENCLEQRVKRWKDSYQWMVSNWLSRITTQFNHIN


 


YQMYDSLSYQADAIKAKIDLEYKKYSGSDKENIKSQVENLKNSLDVKISEAMNNINKFIR


 


ECSVTYLFKNMLPKVIDELNKFDLRTKTELINLIDSHNIILVGEVDRLKAKVNESFENTM


 


PFNIFSYTNNSLLKDIINEYFNSINDSKILSLQNKKNALVDTSGYNAEVRVGDNVQLNTI


 


YTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDLTNSHNEYTIINSIEQNS


 


GWKLCIRNGNIEWILQDVNRKYKSLIFDYSESLSHTGYTNKWFFVTITNNIMGYMKLYIN


 


GELKQSQKIEDLDEVKLDKTIVFGIDENIDENQMLWIRDFNIFSKELSNEDINIVYEGQI


 


LRNVIKDYWGNPLKFDTEYYIINDNYIDRYIAPESNVLVLVQYPDRSKLYTGNPITIKSV


 


SDKNPYSRILNGDNIILHMLYNSRKYMIIRDTDTIYATQGGECSQNCVYALKLQSNLGNY


 


GIGIFSIKNIVSKNKYCSQIFSSFRENTMLLADIYKPWRFSFKNAYTPVAVTNYETKLLS


 


TSSFWKFISRDPGWVE


 


(BoNT/E - UniProt Q00496)


SEQ ID NO: 39



MPKINSFNYNDPVNDRTILYIKPGGCQEFYKSFNIMKNIWIIPERNVIGTTPQDFHPPTS



 


LKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELSKANPYLGNDNTP


 


DNQFHIGDASAVEIKFSNGSQDILLPNVIIMGAEPDLFETNSSNISLRNNYMPSNHRFGS


 


IAIVTFSPEYSFRFNDNCMNEFIQDPALTLMHELIHSLHGLYGAKGITTKYTITQKQNPL


 


ITNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLLADYKKIASKLSKVQVSNPLLNPYK


 


DVFEAKYGLDKDASGIYSVNINKFNDIFKKLYSFTEFDLRTKFQVKCRQTYIGQYKYFKL


 


SNLLNDSIYNISEGYNINNLKVNFRGQNANLNPRIITPITGRGLVKKIIRFCKNIVSVKG


 


IRKSICIEINNGELFFVASENSYNDDNINTPKEIDDTVTSNNNYENDLDQVILNFNSESA


 


PGLSDEKLNLTIQNDAYIPKYDSNGTSDIEQHDVNELNVFFYLDAQKVPEGENNVNLTSS


 


IDTALLEQPKIYTFFSSEFINNVNKPVQAALFVSWIQQVLVDFTTEANQKSTVDKIADIS


 


IVVPYIGLALNIGNEAQKGNFKDALELLGAGILLEFEPELLIPTILVFTIKSFLGSSDNK


 


NKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRKEQMYQALQNQVNAIKTIIE


 


SKYNSYTLEEKNELTNKYDIKQIENELNQKVSIAMNNIDRFLTESSISYLMKIINEVKIN


 


KLREYDENVKTYLLNYIIQHGSILGESQQELNSMVTDTLNNSIPFKLSSYTDDKILISYF


 


NKFFKRIKSSSVLNMRYKNDKYVDTSGYDSNININGDVYKYPTNKNQFGIYNDKLSEVNI


 


SQNDYIIYDNKYKNFSISFWVRIPNYDNKIVNVNNEYTIINCMRDNNSGWKVSLNHNEII


 


WTFEDNRGINQKLAFNYGNANGISDYINKWIFVTITNDRLGDSKLYINGNLIDQKSILNL


 


GNIHVSDNILFKIVNCSYTRYIGIRYFNIFDKELDETEIQTLYSNEPNTNILKDFWGNYL


 


LYDKEYYLLNVLKPNNFIDRRKDSTLSINNIRSTILLANRLYSGIKVKIQRVNNSSTNDN


 


LVRKNDQVYINFVASKTHLFPLYADTATTNKEKTIKISSSGNRFNQVVVMNSVGNCTMNF


 


KNNNGNNIGLLGFKADTVVASTWYYTHMRDHTNSNGCFWNFISEEHGWQEK


 


(BoNT/F - UniProt A7GBG3)


SEQ ID NO: 40



MPVVINSFNYNDPVNDDTILYMQIPYEEKSKKYYKAFEIMRNVWIIPERNTIGTDPSDFD



 


PPASLENGSSAYYDPNYLTTDAEKDRYLKTTIKLFKRINSNPAGEVLLQEISYAKPYLGN


 


EHTPINEFHPVTRTTSVNIKSSTNVKSSIILNLLVLGAGPDIFENSSYPVRKLMDSGGVY


 


DPSNDGFGSINIVTESPEYEYTENDISGGYNSSTESFIADPAISLAHELIHALHGLYGAR


 


GVTYKETIKVKQAPLMIAEKPIRLEEFLTEGGQDLNIITSAMKEKIYNNLLANYEKIATR


 


LSRVNSAPPEYDINEYKDYFQWKYGLDKNADGSYTVNENKFNEIYKKLYSFTEIDLANKF


 


KVKCRNTYFIKYGFLKVPNLLDDDIYTVSEGFNIGNLAVNNRGQNIKLNPKIIDSIPDKG


 


LVEKIVKFCKSVIPRKGTKAPPRLCIRVNNRELFFVASESSYNENDINTPKEIDDTTNLN


 


NNYRNNLDEVILDYNSETIPQISNQTLNTLVQDDSYVPRYDSNGTSEIEEHNVVDLNVFF


 


YLHAQKVPEGETNISLTSSIDTALSEESQVYTFFSSEFINTINKPVHAALFISWINQVIR


 


DFTTEATQKSTFDKIADISLVVPYVGLALNIGNEVQKENFKEAFELLGAGILLEFVPELL


 


IPTILVFTIKSFIGSSENKNKIIKAINNSLMERETKWKEIYSWIVSNWLTRINTQFNKRK


 


EQMYQALQNQVDAIKTVIEYKYNNYTSDERNRLESEYNINNIREELNKKVSLAMENIERF


 


ITESSIFYLMKLINEAKVSKLREYDEGVKEYLLDYISEHRSILGNSVQELNDLVTSTLNN


 


SIPFELSSYTNDKILILYFNKLYKKIKDNSILDMRYENNKFIDISGYGSNISINGDVYIY


 


STNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDC


 


IRNNNSGWKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINKWIFVTITNNRLGN


 


SRIYINGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFKVFDTELGKTEIETL


 


YSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNINQQRGVYQKPNIFSN


 


TRLYTGVEVIIRKNGSTDISNTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEKIIKL


 


IRTSNSNNSLGQIIVMDSIGNNCTMNFQNNNGGNIGLLGFHSNNLVASSWYYNNIRKNTS


 


SNGCFWSFISKEHGWQEN


 


(BoNT/G - UniProt Q60393)


SEQ ID NO: 41



MPVNIKXFNYNDPINNDDIIMMEPFNDPGPGTYYKAFRIIDRIWIVPERFTYGFQPDQFN



 


ASTGVFSKDVYEYYDPTYLKTDAEKDKFLKTMIKLFNRINSKPSGQRLLDMIVDAIPYLG


 


NASTPPDKFAANVANVSINKKIIQPGAEDQIKGLMTNLIIFGPGPVLSDNFTDSMIMNGH


 


SPISEGFGARMMIRFCPSCLNVFNNVQENKDTSIFSRRAYFADPALTLMHELIHVLHGLY


 


GIKISNLPITPNTKEFFMQHSDPVQAEELYTFGGHDPSVISPSTDMNIYNKALQNFQDIA


 


NRLNIVSSAQGSGIDISLYKQIYKNKYDFVEDPNGKYSVDKDKFDKLYKALMFGFTETNL


 


AGEYGIKTRYSYFSEYLPPIKTEKLLDNTIYTQNEGFNIASKNLKTEFNGQNKAVNKEAY


 


EEISLEHLVIYRIAMCKPVMYKNTGKSEQCIIVNNEDLFFIANKDSFSKDLAKAETIAYN


 


TQNNTIENNFSIDQLILDNDLSSGIDLPNENTEPFTNFDDIDIPVYIKQSALKKIFVDGD


 


SLFEYLHAQTFPSNIENLQLTNSLNDALRNNNKVYTFFSTNLVEKANTVVGASLFVNWVK


 


GVIDDFTSESTQKSTIDKVSDVSIIIPYIGPALNVGNETAKENFKNAFEIGGAAILMEFI


 


PELIVPIVGFFTLESYVGNKGHIIMTISNALKKRDQKWTDMYGLIVSQWLSTVNTQFYTI


 


KERMYNALNNQSQAIEKIIEDQYNRYSEEDKMNINIDFNDIDFKLNQSINLAINNIDDFI


 


NQCSISYLMNRMIPLAVKKLKDFDDNLKRDLLEYIDTNELYLLDEVNILKSKVNRHLKDS


 


IPFDLSLYTKDTILIQVFNNYISNISSNAILSLSYRGGRLIDSSGYGATMNVGSDVIFND


 


IGNGQFKLNNSENSNITAHQSKFVVYDSMFDNFSINFWVRTPKYNNNDIQTYLQNEYTII


 


SCIKNDSGWKVSIKGNRIIWTLIDVNAKSKSIFFEYSIKDNISDYINKWFSITITNDRLG


 


NANIYINGSLKKSEKILNLDRINSSNDIDFKLINCTDTTKFVWIKDFNIFGRELNATEVS


 


SLYWIQSSTNTLKDFWGNPLRYDTQYYLFNQGMQNIYIKYFSKASMGETAPRTNFNNAAI


 


NYQNLYLGLRFIIKKASNSRNINNDNIVREGDYIYLNIDNISDESYRVYVLVNSKEIQTQ


 


LFLAPINDDPTFYDVLQIKKYYEKTTYNCQILCEKDTKTFGLFGIGKFVKDYGYVWDTYD


 


NYFCISQWYLRRISENINKLRLGCNWQFIPVDEGWTE


 


(TeNT - UniProt P04958)


SEQ ID NO: 42



MPITINNFRYSDPVNNDTIIMMEPPYCKGLDIYYKAFKITDRIWIVPERYEFGTKPEDFN



 


PPSSLIEGASEYYDPNYLRTDSDKDRFLQTMVKLFNRIKNNVAGEALLDKIINAIPYLGN


 


SYSLLDKFDTNSNSVSFNLLEQDPSGATTKSAMLTNLIIFGPGPVLNKNEVRGIVLRVDN


 


KNYFPCRDGFGSIMQMAFCPEYVPTFDNVIENITSLTIGKSKYFQDPALLLMHELIHVLH


 


GLYGMQVSSHEIIPSKQEIYMQHTYPISAEELFTFGGQDANLISIDIKNDLYEKTLNDYK


 


AIANKLSQVTSCNDPNIDIDSYKQIYQQKYQFDKDSNGQYIVNEDKFQILYNSIMYGFTE


 


IELGKKFNIKTRLSYFSMNHDPVKIPNLLDDTIYNDTEGFNIESKDLKSEYKGQNMRVNT


 


NAFRNVDGSGLVSKLIGLCKKIIPPTNIRENLYNRTASLTDLGGELCIKIKNEDLTFIAE


 


KNSFSEEPFQDEIVSYNTKNKPLNFNYSLDKIIVDYNLQSKITLPNDRTTPVTKGIPYAP


 


EYKSNAASTIEIHNIDDNTIYQYLYAQKSPTTLQRITMTNSVDDALINSTKIYSYFPSVI


 


SKVNQGAQGILFLQWVRDIIDDFTNESSQKTTIDKISDVSTIVPYIGPALNIVKQGYEGN


 


FIGALETTGVVLLLEYIPEITLPVIAALSIAESSTQKEKIIKTIDNFLEKRYEKWIEVYK


 


LVKAKWLGTVNTQFQKRSYQMYRSLEYQVDAIKKIIDYEYKIYSGPDKEQIADEINNLKN


 


KLEEKANKAMININIFMRESSRSFLVNQMINEAKKQLLEFDTQSKNILMQYIKANSKFIG


 


ITELKKLESKINKVFSTPIPFSYSKNLDCWVDNEEDIDVILKKSTILNLDINNDIISDIS


 


GFNSSVITYPDAQLVPGINGKAIHLVNNESSEVIVHKAMDIEYNDMFNNFTVSFWLRVPK


 


VSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLP


 


DKFNAYLANKWVFITITNDRLSSANLYINGVLMGSAEITGLGAIREDNNITLKLDRCNNN


 


NQYVSIDKFRIFCKALNPKEIEKLYTSYLSITFLRDFWGNPLRYDTEYYLIPVASSSKDV


 


QLKNITDYMYLTNAPSYTNGKLNIYYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFIKLYV


 


SYNNNEHIVGYPKDGNAFNNLDRILRVGYNAPGIPLYKKMEAVKLRDLKTYSVQLKLYDD


 


KNASLGLVGTHNGQIGNDPNRDILIASNWYFNHLKDKILGCDWYFVPTDEGWTND


 


(Nucleotide Sequence of LHN/A1 with an EK Cleavage Site)


SEQ ID NO: 43



ATGGAGTTCGTTAACAAACAGTTCAACTATAAAGACCCAGTTAACGGTGTTGACATTGCTTACATCAAAATCCCG



 


AACGCTGGCCAGATGCAGCCGGTAAAGGCATTCAAAATCCACAACAAAATCTGGGTTATCCCGGAACGTGATACC


 


TTTACTAACCCGGAAGAAGGTGACCTGAACCCGCCACCGGAAGCGAAACAGGTGCCGGTATCTTACTATGACTCC


 


ACCTACCTGTCTACCGATAACGAAAAGGACAACTACCTGAAAGGTGTTACTAAACTGTTCGAGCGTATTTACTCC


 


ACCGACCTGGGCCGTATGCTGCTGACTAGCATCGTTCGCGGTATCCCGTTCTGGGGCGGTTCTACCATCGATACC


 


GAACTGAAAGTAATCGACACTAACTGCATCAACGTTATTCAGCCGGACGGTTCCTATCGTTCCGAAGAACTGAAC


 


CTGGTGATCATCGGCCCGTCTGCTGATATCATCCAGTTCGAGTGTAAGAGCTTTGGTCACGAAGTTCTGAACCTC


 


ACCCGTAACGGCTACGGTTCCACTCAGTACATCCGTTTCTCTCCGGACTTCACCTTCGGTTTTGAAGAATCCCTG


 


GAAGTAGACACGAACCCACTGCTGGGCGCTGGTAAATTCGCAACTGATCCTGCGGTTACCCTGGCTCACGAACTG


 


ATTCATGCAGGCCACCGCCTGTACGGTATCGCCATCAATCCGAACCGTGTCTTCAAAGTTAACACCAACGCGTAT


 


TACGAGATGTCCGGTCTGGAAGTTAGCTTCGAAGAACTGCGTACTTTTGGCGGTCACGACGCTAAATTCATCGAC


 


TCTCTGCAAGAAAACGAGTTCCGTCTGTACTACTATAACAAGTTCAAAGATATCGCATCCACCCTGAACAAAGCG


 


AAATCCATCGTGGGTACCACTGCTTCTCTCCAGTACATGAAGAACGTTTTTAAAGAAAAATACCTGCTCAGCGAA


 


GACACCTCCGGCAAATTCTCTGTAGACAAGTTGAAATTCGATAAACTTTACAAAATGCTGACTGAAATTTACACC


 


GAAGACAACTTCGTTAAGTTCTTTAAAGTTCTGAACCGCAAAACCTATCTGAACTTCGACAAGGCAGTATTCAAA


 


ATCAACATCGTGCCGAAAGTTAACTACACTATCTACGATGGTTTCAACCTGCGTAACACCAACCTGGCTGCTAAT


 


TTTAACGGCCAGAACACGGAAATCAACAACATGAACTTCACAAAACTGAAAAACTTCACTGGTCTGTTCGAGTTT


 


TACAAGCTGCTGTGCGTCGACGGCATCATTACCTCCAAAACTAAATCTGACGATGACGATAAAAACAAAGCGCTG


 


AACCTGCAGTGTATCAAGGTTAACAACTGGGATTTATTCTTCAGCCCGAGTGAAGACAACTTCACCAACGACCTG


 


AACAAAGGTGAAGAAATCACCTCAGATACTAACATCGAAGCAGCCGAAGAAAACATCTCGCTGGACCTGATCCAG


 


CAGTACTACCTGACCTTTAATTTCGACAACGAGCCGGAAAACATTTCTATCGAAAACCTGAGCTCTGATATCATC


 


GGCCAGCTGGAACTGATGCCGAACATCGAACGTTTCCCAAACGGTAAAAAGTACGAGCTGGACAAATATACCATG


 


TTCCACTACCTGCGCGCGCAGGAATTTGAACACGGCAAATCCCGTATCGCACTGACTAACTCCGTTAACGAAGCT


 


CTGCTCAACCCGTCCCGTGTATACACCTTCTTCTCTAGCGACTACGTGAAAAAGGTCAACAAAGCGACTGAAGCT


 


GCAATGTTCTTGGGTTGGGTTGAACAGCTTGTTTATGATTTTACCGACGAGACGTCCGAAGTATCTACTACCGAC


 


AAAATTGCGGATATCACTATCATCATCCCGTACATCGGTCCGGCTCTGAACATTGGCAACATGCTGTACAAAGAC


 


GACTTCGTTGGCGCACTGATCTTCTCCGGTGCGGTGATCCTGCTGGAGTTCATCCCGGAAATCGCCATCCCGGTA


 


CTGGGCACCTTTGCTCTGGTTTCTTACATTGCAAACAAGGTTCTGACTGTACAAACCATCGACAACGCGCTGAGC


 


AAACGTAACGAAAAATGGGATGAAGTTTACAAATATATCGTGACCAACTGGCTGGCTAAGGTTAATACTCAGATC


 


GACCTCATCCGCAAAAAAATGAAAGAAGCACTGGAAAACCAGGCGGAAGCTACCAAGGCAATCATTAACTACCAG


 


TACAACCAGTACACCGAGGAAGAAAAAAACAACATCAACTTCAACATCGACGATCTGTCCTCTAAACTGAACGAA


 


TCCATCAACAAAGCTATGATCAACATCAACAAGTTCCTGAACCAGTGCTCTGTAAGCTATCTGATGAACTCCATG


 


ATCCCGTACGGTGTTAAACGTCTGGAGGACTTCGATGCGTCTCTGAAAGACGCCCTGCTGAAATACATTTACGAC


 


AACCGTGGCACTCTGATCGGTCAGGTTGATCGTCTGAAGGACAAAGTGAACAATACCTTATCGACCGACATCCCT


 


TTTCAGCTCAGTAAATATGTCGATAACCAACGCCTTTTGTCCACTCTAGAAGCACACCATCATCACCACCATCAC


 


CATCACCAT


 


(Polypeptide Sequence of LHN/A1 with an EK Cleavage Site)


SEQ ID NO: 44



MEFVNKQFNYKDPVNGVDIAYIKIPNAGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDS



 


TYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELN


 


LVIIGPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHEL


 


IHAGHRLYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTEGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKA


 


KSIVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFK


 


INIVPKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFTGLFEFYKLLCVDGIITSKTKSDDDDKNKAL


 


NLQCIKVNNWDLFFSPSEDNFTNDLNKGEEITSDTNIEAAEENISLDLIQQYYLTFNFDNEPENISIENLSSDII


 


GQLELMPNIERFPNGKKYELDKYTMFHYLRAQEFEHGKSRIALTNSVNEALLNPSRVYTFFSSDYVKKVNKATEA


 


AMFLGWVEQLVYDFTDETSEVSTTDKIADITIIIPYIGPALNIGNMLYKDDFVGALIFSGAVILLEFIPEIAIPV


 


LGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLAKVNTQIDLIRKKMKEALENQAEATKAIINYQ


 


YNQYTEEEKNNINFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDALLKYIYD


 


NRGTLIGQVDRLKDKVNNTLSTDIPFQLSKYVDNQRLLSTLEAHHHHHHHHHH


 


(Nucleotide Sequence of BoNT with a Native A1 Loop)


SEQ ID NO: 45



ATGAAACTGGAAATCAACAAATTCAACTACAACGATCCGATCGATGGCATTAATGTTATTACCATGCGTCCGCCT



 


CGTCATAGCGATAAAATCAATAAAGGTAAAGGTCCGTTCAAAGCCTTTCAGGTGATTAAAAACATTTGGATTGTG


 


CCGGAACGCTACAACTTTACCAATAATACCAACGATCTGAACATTCCGAGCGAACCGATTATGGAAGCAGATGCC


 


ATTTATAACCCGAACTATCTGAATACCCCGAGCGAAAAAGATGAATTTCTGCAGGGTGTTATCAAAGTGCTGGAA


 


CGCATTAAAAGCAAACCGGAAGGTGAAAAACTGCTGGAACTGATTAGCAGCAGCATTCCGCTGCCGCTGGTTAGC


 


AATGGTGCACTGACCCTGAGCGATAATGAAACCATTGCATATCAAGAGAACAACAACATTGTGAGCAATCTGCAG


 


GCAAACCTGGTTATTTATGGTCCGGGTCCTGATATTGCAAATAATGCAACCTATGGTCTGTATAGCACCCCGATT


 


AGTAATGGTGAAGGTACACTGAGCGAAGTTAGCTTTAGCCCGTTTTATCTGAAACCGTTTGATGAAAGCTATGGC


 


AATTATCGTAGCCTGGTGAATATCGTGAACAAATTCGTGAAACGTGAATTTGCACCTGATCCGGCAAGCACCCTG


 


ATGCATGAACTGGTTCATGTTACCCATAATCTGTATGGTATTAGCAACCGCAACTTCTACTATAACTTTGACACC


 


GGCAAAATTGAAACCAGCCGTCAGCAGAATAGCCTGATTTTTGAAGAACTGCTGACCTTTGGTGGCATTGATAGC


 


AAAGCAATTAGCAGCCTGATCATCAAGAAAATTATCGAAACCGCCAAGAACAACTATACCACGCTGATTAGCGAA


 


CGCCTGAATACCGTTACCGTTGAAAATGATCTGCTGAAATATATCAAAAACAAAATCCCGGTTCAGGGTCGTCTG


 


GGTAACTTTAAACTGGATACCGCAGAATTCGAGAAAAAGCTGAATACCATTCTGTTTGTGCTGAACGAAAGCAAT


 


CTGGCACAGCGTTTTAGCATTCTGGTTCGTAAACATTACCTGAAAGAACGTCCGATTGATCCGATTTATGTGAAC


 


ATTCTGGATGACAATAGCTACAGCACCCTGGAAGGTTTTAACATTAGCAGTCAGGGTAGCAATGATTTCCAAGGT


 


CAGCTGCTGGAAAGCAGCTATTTTGAAAAAATTGAAAGCAATGCCCTGCGTGCCTTCATTAAAATCTGTCCGCGT


 


AATGGTCTGCTGTATAATGCCATTTATCGCAACAGCAAAAATCTGGAAGTTCTGTTTCAGGGTCCGCATCATCAC


 


CACCATCACCATCATCATCACCTGGAAGTGTTATTTCAGGGACCGTATCTGAATAACATTGATCTGGAAGATAAA


 


AAGACCACGAGCAAAACCAATGTTAGCTATCCGTGTAGCCTGCTGAATGGTTGTATTGAAGTTGAAAACAAAGAC


 


CTGTTCCTGATTAGCAACAAAGATAGCCTGAACGATATTAACCTGAGCGAAGAAAAAATCAAACCGGAAACCACC


 


GTGTTCTTCAAAGATAAACTGCCTCCGCAGGATATTACGCTGAGCAATTATGATTTTACCGAAGCCAATAGCATT


 


CCGAGCATTAGCCAGCAGAACATTCTGGAACGTAATGAAGAACTGTATGAACCGATTCGCAATAGCCTGTTTGAA


 


ATCAAAACCATCTATGTGGATAAGCTGACCACCTTTCATTTTCTGGAAGCCCAGAATATTGATGAGAGCATTGAT


 


AGCAGCAAAATTCGTGTTGAACTGACCGATAGCGTTGATGAAGCACTGAGCAATCCGAATAAAGTTTATAGCCCG


 


TTCAAGAACATGAGCAACACCATTAATAGCATTGAAACCGGTATTACCAGCACCTACATCTTTTATCAGTGGCTG


 


CGTAGCATCGTGAAAGATTTTAGTGATGAAACCGGCAAAATCGACGTGATTGATAAAAGCAGCGATACCCTGGCA


 


ATTGTTCCGTATATTGGTCCGCTGCTGAATATTGGTAATGATATTCGTCATGGCGATTTTGTGGGTGCAATTGAA


 


CTGGCAGGCATTACCGCACTGCTGGAATATGTTCCGGAATTTACCATTCCGATTCTGGTTGGTCTGGAAGTGATT


 


GGTGGCGAACTGGCACGTGAACAGGTTGAAGCAATTGTTAATAATGCCCTGGATAAACGCGATCAGAAATGGGCA


 


GAAGTTTACAATATTACCAAAGCACAGTGGTGGGGCACCATTCATTTACAGATTAATACCCGTCTGGCCCATACC


 


TATAAAGCCCTGAGCCGTCAGGCAAATGCCATTAAAATGAATATGGAATTTCAGCTGGCCAACTACAAAGGCAAC


 


ATTGATGATAAAGCCAAGATCAAAAACGCCATCAGCGAAACCGAAATTCTGCTGAACAAAAGCGTTGAACAGGCC


 


ATGAAAAACACCGAGAAATTCATGATTAAACTGAGCAACAGCTACCTGACCAAAGAAATGATTCCGAAAGTTCAG


 


GACAACCTGAAAAACTTTGACCTGGAAACCAAAAAAACCCTGGACAAGTTCATCAAAGAGAAAGAAGATATCCTG


 


GGCACCAATCTGAGCAGCAGCCTGCGTCGTAAAGTTAGCATTCGTCTGAATAAAAACATTGCCTTCGACATCAAC


 


GATATCCCGTTTAGCGAATTTGATGATCTGATCAACCAGTACAAAAACGAGATCGAAGATTATGAAGTGCTGAAT


 


CTGGGTGCAGAAGATGGCAAAATCAAAGATCTGAGCGGTACAACCAGCGATATCAATATTGGTTCAGATATCGAA


 


CTGGCCGATGGTCGTGAAAATAAAGCCATTAAGATTAAAGGCAGCGAGAACAGCACCATCAAAATTGCAATGAAC


 


AAATATCTGCGTTTTAGCGCCACCGATAACTTTAGCATTAGCTTTTGGATCAAACATCCGAAACCGACCAATCTG


 


CTTAATAACGGTATTGAATATACCCTGGTCGAGAACTTTAATCAGCGTGGTTGGAAAATTAGCATCCAGGATAGC


 


AAACTGATTTGGTATCTGCGCGATCACAATAACAGCATCAAAATCGTTACACCGGATTATATTGCGTTTAATGGC


 


TGGAACCTGATCACCATTACGAATAATCGTAGCAAAGGCAGCATCGTGTATGTGAATGGTAGCAAAATTGAAGAG


 


AAGGACATTAGCAGCATTTGGAATACCGAAGTGGATGATCCGATTATCTTCCGCCTGAAAAATAACCGTGATACC


 


CAGGCATTTACCCTGCTGGATCAGTTTAGCATTTATCGGAAAGAACTGAACCAGAACGAAGTGGTGAAACTGTAT


 


AACTACTACTTCAACAGCAACTACATTCGCGATATTTGGGGTAATCCGCTGCAGTACAACAAAAAATACTATCTG


 


CAGACCCAGGACAAACCTGGTAAAGGTCTGATCCGCGAATATTGGAGCAGCTTTGGTTATGATTATGTGATTCTG


 


AGCGATAGCAAGACGATTACCTTTCCGAACAATATCCGTTATGGTGCCCTGTATAACGGTAGCAAAGTTCTGATC


 


AAGAACAGCAAGAAATTAGATGGTCTGGTGCGCAATAAAGATTTCATTCAGCTGGAAATCGATGGCTATAATATG


 


GGTATTAGCGCAGATCGCTTTAACGAGGATACCAACTATATTGGCACCACCTATGGTACAACCCATGATCTGACC


 


ACCGATTTTGAAATTATTCAGCGCCAAGAGAAATACCGCAATTATTGTCAGCTGAAAACCCCGTATAACATCTTT


 


CATAAAAGCGGTCTGATGAGCACCGAAACCAGCAAACCGACCTTCCATGATTATCGCGATTGGGTTTATAGCAGC


 


GCATGGTATTTTCAGAACTATGAAAATCTGAACCTGCGCAAACATACCAAAACCAACTGGTATTTTATCCCGAAA


 


GATGAAGGTTGGGACGAAGAT


 


(Polypeptide Sequence of BoNT with a Native A1 Loop)


SEQ ID NO: 46



MKLEINKFNYNDPIDGINVITMRPPRHSDKINKGKGPFKAFQVIKNIWIVPERYNFTNNTNDLNIPSEPIMEADA



 


IYNPNYLNTPSEKDEFLQGVIKVLERIKSKPEGEKLLELISSSIPLPLVSNGALTLSDNETIAYQENNNIVSNLQ


 


ANLVIYGPGPDIANNATYGLYSTPISNGEGTLSEVSFSPFYLKPFDESYGNYRSLVNIVNKFVKREFAPDPASTL


 


MHELVHVTHNLYGISNRNFYYNFDTGKIETSRQQNSLIFEELLTFGGIDSKAISSLIIKKIIETAKNNYTTLISE


 


RLNTVTVENDLLKYIKNKIPVQGRLGNFKLDTAEFEKKLNTILFVLNESNLAQRFSILVRKHYLKERPIDPIYVN


 


ILDDNSYSTLEGFNISSQGSNDFQGQLLESSYFEKIESNALRAFIKICPRNGLLYNAIYRNSKNLEVLFQGPHHH


 


HHHHHHHLEVLFQGPYLNNIDLEDKKTTSKTNVSYPCSLLNGCIEVENKDLFLISNKDSLNDINLSEEKIKPETT


 


VFFKDKLPPQDITLSNYDFTEANSIPSISQQNILERNEELYEPIRNSLFEIKTIYVDKLTTFHFLEAQNIDESID


 


SSKIRVELTDSVDEALSNPNKVYSPFKNMSNTINSIETGITSTYIFYQWLRSIVKDFSDETGKIDVIDKSSDTLA


 


IVPYIGPLLNIGNDIRHGDFVGAIELAGITALLEYVPEFTIPILVGLEVIGGELAREQVEAIVNNALDKRDQKWA


 


EVYNITKAQWWGTIHLQINTRLAHTYKALSRQANAIKMNMEFQLANYKGNIDDKAKIKNAISETEILLNKSVEQA


 


MKNTEKFMIKLSNSYLTKEMIPKVQDNLKNEDLETKKTLDKFIKEKEDILGTNLSSSLRRKVSIRLNKNIAFDIN


 


DIPFSEFDDLINQYKNEIEDYEVLNLGAEDGKIKDLSGTTSDINIGSDIELADGRENKAIKIKGSENSTIKIAMN


 


KYLRFSATDNFSISFWIKHPKPTNLLNNGIEYTLVENFNQRGWKISIQDSKLIWYLRDHNNSIKIVTPDYIAFNG


 


WNLITITNNRSKGSIVYVNGSKIEEKDISSIWNTEVDDPIIFRLKNNRDTQAFTLLDQFSIYRKELNQNEVVKLY


 


NYYFNSNYIRDIWGNPLQYNKKYYLQTQDKPGKGLIREYWSSFGYDYVILSDSKTITFPNNIRYGALYNGSKVLI


 


KNSKKLDGLVRNKDFIQLEIDGYNMGISADRFNEDTNYIGTTYGTTHDLTTDFEIIQRQEKYRNYCQLKTPYNIF


 


HKSGLMSTETSKPTFHDYRDWVYSSAWYFQNYENLNLRKHTKTNWYFIPKDEGWDED


 


(Polypeptide Sequence of Trypsin)


SEQ ID NO: 47



MHPLLILAFVGAAVAFPSDDDDKIVGGYTCAENSVPYQVSLNAGYHFCGGSLINDQWVVS



 


AAHCYQYHIQVRLGEYNIDVLEGGEQFIDASKIIRHPKYSSWTLDNDILLIKLSTPAVIN


 


ARVSTLALPSACASGSTECLISGWGNTLSSGVNYPDLLQCLEAPLLSHADCEASYPGEIT


 


NNMICAGFLEGGKDSCQGDSGGPVACNGQLQGIVSWGYGCAQKGKPGVYTKVCNYVDWIQ


 


ETIAANS


 


(Polypeptide Sequence of Lys-C)


SEQ ID NO: 48



G V S G S C N I D V V C P E G N G H R D V I R S V A A Y S K Q G T M W C T G



 


S L V N N S A N D K K M Y F L T A N H C G M T T A A I A S S M V V Y W N Y Q


 


N S T C R A P G S S S S G A N G D G S L A Q S Q T G A V V R A T N A A S D F


 


T L L E L N T A A N P A Y N L F W A G W D R R D Q N F A G A T A I H H P N V


 


A E K R I S H S T V A T E I S G Y N G A T G T S H L H V F W Q A S G G V T E


 


P G S S G S P I Y S P E K R V L G Q L H 211 G G P S S C S A T G A D R S D Y


 


Y G R V F T S W T G G G T S A T R L S D W L D A A G T G A Q F I D G L D S T


 


G T P P V


 


(Polypeptide Sequence of Enterokinase Light Chain)


SEQ ID NO: 49



IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLH



 


MASNLTSPQIETRLIDQIVINRHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVF


 


PPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITENMVCAGYDAGGV


 


DSCQGDSGGPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH


 


(Polypeptide Sequence of Factor Xa Heavy Chain)


SEQ ID NO: 50



IVGGRDCAEGECPWQALLVNEENEGFCGGTILNEFYVLTAAHCLHQAKRFTVRVGDRNTEQEEGNEMAHEVEMTV



 


KHSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQKTGIVSGFGRTHEKGRLSSTLKMLEVPY


 


VDRSTCKLSSSFTITPNMFCAGYDTQPEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKFGVYTKVSNFL


 


KWIDKIMKARAGAAGSRGHSEAPATWTVPPPLPL


 


(Polypeptide Sequence of Factor Xa Light Chain)


SEQ ID NO: 51



ANSFLEEVKQGNLERECLEEACSLEEAREVFEDAEQTDEFWSKYKDGDQCEGHPCLNQGHCKDGIGDYTCTCAEG



 


FEGKNCEFSTREICSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPCGKFTQGRS


 


(Polypeptide Sequence of Anthrax Toxin Protective Antigen - NCBI Ref Seq:


NP_052806)


SEQ ID NO: 52










1
mkkrkvlipl malstilvss tgnlevigae vkqenrllne sesssqgllg yyfsdlnfqa



 


61
pmvvtssttg dlsipssele nipsenqyfq saiwsgfikv kksdeytfat sadnhvtmwv


 


121
ddqevinkas nsnkirlekg rlyqikiqyq renptekgld fklywtdsqn kkevissdnl


 


181
qlpelkqkss nsrkkrstsa gptvpdrdnd gipdsleveg ytvdvknkrt flspwisnih


 


241
ekkgltkyks spekwstasd pysdfekvtg ridknvspea rhplvaaypi vhvdmeniil


 


301
sknedqstqn tdsqtrtisk ntstsrthts evhgnaevha sffdiggsys agfsnsnsst


 


361
vaidhslsla gertwaetmg lntadtarin aniryvntgt apiynvlptt slvlgknqtl


 


421
atikakenql sqilapnnyy psknlapial naqddfsstp itmnynqfle lektkqlrld


 


481
tdqvygniat ynfengrvrv dtgsnwsevl pqiqettari ifngkdlnlv erriaavnps


 


541
dplettkpdm tlkealkiaf gfnepngnlq yqgkditefd fnfdqqtsqn iknqlaelna


 


601
tniytvldki klnakmnili rdkrfhydrn niavgadesv vkeahrevin ssteglllni


 


661
dkdirkilsg yiveiedteg lkevindryd mlnisslrqd gktfidfkky ndklplyisn


 


721
pnykvnvyav tkentiinps engdtstngi kkilifskkg yeig


 








(LHN/A with a C1 Activation Loop)



SEQ ID NO: 53



MPFVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLN



 


PPPEAKQVPVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGG


 


STIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNGY


 


GSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPN


 


RVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKA


 


KSIVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKV


 


LNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFT


 


GLFEFYKLLCHKA SLYNKTLDCIKVNNWDLFFSPSEDNFTNDLNKGEE


 


ITSDTNIEAAEENISLDLIQQYYLTFNFDNEPENISIENLSSDIIGQLELMPNIERFPNG


 


KKYELDKYTMFHYLRAQEFEHGKSRIALTNSVNEALLNPSRVYTFFSSDYVKKVNKATEA


 


AMFLGWVEQLVYDFTDETSEVSTTDKIADITIIIPYIGPALNIGNMLYKDDFVGALIFSG


 


AVILLEFIPEIAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLAK


 


VNTQIDLIRKKMKEALENQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNESINKA


 


MININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDALLKYIYDNRGTLIGQVDRLKDK


 


VNNTLSTDIPFQLSKYVDNQRLLSTFTEYIK


 


(LHN/B with a C1 Activation Loop)


SEQ ID NO: 54



MPVTINNFNYNDPIDNNNIIMMEPPFARGTGRYYKAFKITDRIWIIPERYTEGYKPEDFN



 


KSSGIFNRDVCEYYDPDYLNTNDKKNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLG


 


DRRVPLEEFNTNIASVTVNKLISNPGEVERKKGIFANLIIFGPGPVLNENETIDIGIQNH


 


FASREGFGGIMQMKFCPEYVSVFNNVQENKGASIFNRRGYFSDPALILMHELIHVLHGLY


 


GIKVDDLPIVPNEKKFFMQSTDAIQAEELYTFGGQDPSIITPSTDKSIYDKVLQNFRGIV


 


DRLNKVLVCISDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLMFGFTETN


 


IAENYKIKTRASYFSDSLPPVKIKNLLDNEIYTIEEGFNISDKDMEKEYRGQNKAINKQA


 


YEEISKEHLAVYKIQMCHKA SLYNKTLDCIDVDNEDLFFIADKNSFSDDLSKNE


 


RIEYNTQSNYIENDFPINELILDTDLISKIELPSENTESLTDFNVDVPVYEKQPAIKKIF


 


TDENTIFQYLYSQTFPLDIRDISLTSSFDDALLFSNKVYSFFSMDYIKTANKVVEAGLFA


 


GWVKQIVNDFVIEANKSNTMDKIADISLIVPYIGLALNVGNETAKGNFENAFEIAGASIL


 


LEFIPELLIPVVGAFLLESYIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQ


 


FYTIKEGMYKALNYQAQALEEIIKYRYNIYSEKEKSNINIDFNDINSKLNEGINQAIDNI


 


NNFINGCSVSYLMKKMIPLAVEKLLDFDNTLKKNLLNYIDENKLYLIGSAEYEKSKVNKY


 


LKTIMPFDLSIYTNDTILIEMFNKYNS


 


(LHN/D with a C1 Activation Loop)


SEQ ID NO: 55



MTWPVKDFNYSDPVNDNDILYLRIPQNKLITTPVKAFMITQNIWVIPERFSSDTNPSLSK



 


PPRPTSKYQSYYDPSYLSTDEQKDTFLKGIIKLFKRINERDIGKKLINYLVVGSPFMGDS


 


STPEDTFDFTRHTTNIAVEKFENGSWKVTNIITPSVLIFGPLPNILDYTASLTLQGQQSN


 


PSFEGFGTLSILKVAPEFLLTFSDVTSNQSSAVLGKSIFCMDPVIALMHELTHSLHQLYG


 


INIPSDKRIRPQVSEGFFSQDGPNVQFEELYTFGGLDVEIIPQIERSQLREKALGHYKDI


 


AKRLNNINKTIPSSWISNIDKYKKIFSEKYNFDKDNTGNFVVNIDKFNSLYSDLTNVMSE


 


VVYSSQYNVKNRTHYFSRHYLPVFANILDDNIYTIRDGFNLTNKGFNIENSGQNIERNPA


 


LQKLSSESVVDLFTKVCHKA SLYNKTLDCIKVKNNRLPYVADKDSISQEIFENKIITDE


 


TNVQNYSDKFSLDESILDGQVPINPEIVDPLLPNVNMEPLNLPGEEIVFYDDITKYVDYL


 


NSYYYLESQKLSNNVENITLTTSVEEALGYSNKIYTFLPSLAEKVNKGVQAGLFLNWANE


 


VVEDFTTNIMKKDTLDKISDVSVIIPYIGPALNIGNSALRGNENQAFATAGVAFLLEGFP


 


EFTIPALGVFTFYSSIQEREKIIKTIENCLEQRVKRWKDSYQWMVSNWLSRITTQFNHIN


 


YQMYDSLSYQADAIKAKIDLEYKKYSGSDKENIKSQVENLKNSLDVKISEAMNNINKFIR


 


ECSVTYLFKNMLPKVIDELNKFDLRTKTELINLIDSHNIILVGEVDRLKAKVNESFENTM


 


PFNIFSYTNNSLLKDIINEYFN


 


(LHN/E with a C1 Activation Loop)


SEQ ID NO: 56



MPKINSFNYNDPVNDRTILYIKPGGCQEFYKSFNIMKNIWIIPERNVIGTTPQDFHPPTS



 


LKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELSKANPYLGNDNTP


 


DNQFHIGDASAVEIKFSNGSQDILLPNVIIMGAEPDLFETNSSNISLRNNYMPSNHRFGS


 


IAIVTESPEYSFRFNDNCMNEFIQDPALTLMHELIHSLHGLYGAKGITTKYTITQKQNPL


 


ITNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLLADYKKIASKLSKVQVSNPLLNPYK


 


DVFEAKYGLDKDASGIYSVNINKFNDIFKKLYSFTEFDLRTKFQVKCRQTYIGQYKYFKL


 


SNLLNDSIYNISEGYNINNLKVNFRGQNANLNPRIITPITGRGLVKKIIRFCHKA 


 


SLYNKTLDCIEINNGELFFVASENSYNDDNINTPKEIDDTVTSNNNYENDLDQVILNFNS


 


ESAPGLSDEKLNLTIQNDAYIPKYDSNGTSDIEQHDVNELNVFFYLDAQKVPEGENNVNL


 


TSSIDTALLEQPKIYTFFSSEFINNVNKPVQAALFVSWIQQVLVDFTTEANQKSTVDKIA


 


DISIVVPYIGLALNIGNEAQKGNFKDALELLGAGILLEFEPELLIPTILVFTIKSFLGSS


 


DNKNKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRKEQMYQALQNQVNAIKT


 


IIESKYNSYTLEEKNELTNKYDIKQIENELNQKVSIAMNNIDRFLTESSISYLMKIINEV


 


KINKLREYDENVKTYLLNYIIQHGSILGESQQELNSMVTDTLNNSIPFKLSSYTDDKILI


 


SYFNKFFK


 


(LHN/F with a C1 Activation Loop)


SEQ ID NO: 57



MPVVINSFNYNDPVNDDTILYMQIPYEEKSKKYYKAFEIMRNVWIIPERNTIGTDPSDFD



 


PPASLENGSSAYYDPNYLTTDAEKDRYLKTTIKLFKRINSNPAGEVLLQEISYAKPYLGN


 


EHTPINEFHPVTRTTSVNIKSSTNVKSSIILNLLVLGAGPDIFENSSYPVRKLMDSGGVY


 


DPSNDGFGSINIVTFSPEYEYTFNDISGGYNSSTESFIADPAISLAHELIHALHGLYGAR


 


GVTYKETIKVKQAPLMIAEKPIRLEEFLTFGGQDLNIITSAMKEKIYNNLLANYEKIATR


 


LSRVNSAPPEYDINEYKDYFQWKYGLDKNADGSYTVNENKFNEIYKKLYSFTEIDLANKF


 


KVKCRNTYFIKYGFLKVPNLLDDDIYTVSEGFNIGNLAVNNRGQNIKLNPKIIDSIPDKG


 


LVEKIVKFCHKA SLYNKTLDCIRVNNRELFFVASESSYNENDINTPKEIDDTTNLN


 


NNYRNNLDEVILDYNSETIPQISNQTLNTLVQDDSYVPRYDSNGTSEIEEHNVVDLNVFF


 


YLHAQKVPEGETNISLTSSIDTALSEESQVYTFFSSEFINTINKPVHAALFISWINQVIR


 


DFTTEATQKSTFDKIADISLVVPYVGLALNIGNEVQKENFKEAFELLGAGILLEFVPELL


 


IPTILVFTIKSFIGSSENKNKIIKAINNSLMERETKWKEIYSWIVSNWLTRINTQFNKRK


 


EQMYQALQNQVDAIKTVIEYKYNNYTSDERNRLESEYNINNIREELNKKVSLAMENIERF


 


ITESSIFYLMKLINEAKVSKLREYDEGVKEYLLDYISEHRSILGNSVQELNDLVTSTLNN


 


SIPFELSSYTNDKILILYFNKLYK


 


(LHN/G with a C1 Activation Loop)


SEQ ID NO: 58



MPVNIKXFNYNDPINNDDIIMMEPFNDPGPGTYYKAFRIIDRIWIVPERFTYGFQPDQFN



 


ASTGVFSKDVYEYYDPTYLKTDAEKDKFLKTMIKLFNRINSKPSGQRLLDMIVDAIPYLG


 


NASTPPDKFAANVANVSINKKIIQPGAEDQIKGLMTNLIIFGPGPVLSDNFTDSMIMNGH


 


SPISEGFGARMMIRFCPSCLNVFNNVQENKDTSIFSRRAYFADPALTLMHELIHVLHGLY


 


GIKISNLPITPNTKEFFMQHSDPVQAEELYTFGGHDPSVISPSTDMNIYNKALQNFQDIA


 


NRLNIVSSAQGSGIDISLYKQIYKNKYDEVEDPNGKYSVDKDKFDKLYKALMFGFTETNL


 


AGEYGIKTRYSYFSEYLPPIKTEKLLDNTIYTQNEGFNIASKNLKTEFNGQNKAVNKEAY


 


EEISLEHLVIYRIAMCHKA SLYNKTLDCIIVNNEDLFFIANKDSFSKDLAKAETIAYN


 


TQNNTIENNFSIDQLILDNDLSSGIDLPNENTEPFTNFDDIDIPVYIKQSALKKIFVDGD


 


SLFEYLHAQTFPSNIENLQLTNSLNDALRNNNKVYTFFSTNLVEKANTVVGASLFVNWVK


 


GVIDDFTSESTQKSTIDKVSDVSIIIPYIGPALNVGNETAKENFKNAFEIGGAAILMEFI


 


PELIVPIVGFFTLESYVGNKGHIIMTISNALKKRDQKWTDMYGLIVSQWLSTVNTQFYTI


 


KERMYNALNNQSQAIEKIIEDQYNRYSEEDKMNINIDFNDIDFKLNQSINLAINNIDDFI


 


NQCSISYLMNRMIPLAVKKLKDFDDNLKRDLLEYIDTNELYLLDEVNILKSKVNRHLKDS


 


IPFDLSLYTKDTILIQVFNNYIS


 


(LHN/TeNT with a C1 Activation Loop)


SEQ ID NO: 59



MPITINNFRYSDPVNNDTIIMMEPPYCKGLDIYYKAFKITDRIWIVPERYEFGTKPEDFN



 


PPSSLIEGASEYYDPNYLRTDSDKDRFLQTMVKLFNRIKNNVAGEALLDKIINAIPYLGN


 


SYSLLDKFDTNSNSVSFNLLEQDPSGATTKSAMLTNLIIFGPGPVLNKNEVRGIVLRVDN


 


KNYFPCRDGFGSIMQMAFCPEYVPTFDNVIENITSLTIGKSKYFQDPALLLMHELIHVLH


 


GLYGMQVSSHEIIPSKQEIYMQHTYPISAFELFTFGGQDANLISIDIKNDLYEKTLNDYK


 


AIANKLSQVTSCNDPNIDIDSYKQIYQQKYQFDKDSNGQYIVNEDKFQILYNSIMYGFTE


 


IELGKKFNIKTRLSYFSMNHDPVKIPNLLDDTIYNDTEGFNIESKDLKSEYKGQNMRVNT


 


NAFRNVDGSGLVSKLIGLCHKA SLYNKTLDCIKIKNEDLTFIAE


 


KNSFSEEPFQDEIVSYNTKNKPLNFNYSLDKIIVDYNLQSKITLPNDRTTPVTKGIPYAP


 


EYKSNAASTIEIHNIDDNTIYQYLYAQKSPTTLQRITMTNSVDDALINSTKIYSYFPSVI


 


SKVNQGAQGILFLQWVRDIIDDFTNESSQKTTIDKISDVSTIVPYIGPALNIVKQGYEGN


 


FIGALETTGVVLLLEYIPEITLPVIAALSIAESSTQKEKIIKTIDNFLEKRYEKWIEVYK


 


LVKAKWLGTVNTQFQKRSYQMYRSLEYQVDAIKKIIDYEYKIYSGPDKEQIADEINNLKN


 


KLEEKANKAMININIFMRESSRSFLVNQMINEAKKQLLEFDTQSKNILMQYIKANSKFIG


 


ITELKKLESKINKVFSTPIPFSYSKNLDCWVDNEEDIDV


 


(LHN/X with a C1 Activation Loop)


SEQ ID NO: 60



MKLEINKFNYNDPIDGINVITMRPPRHSDKINKGKGPFKAFQVIKNIWIVPERYNFTNNT



 


NDLNIPSEPIMEADAIYNPNYLNTPSEKDEFLQGVIKVLERIKSKPEGEKLLELISSSIP


 


LPLVSNGALTLSDNETIAYQENNNIVSNLQANLVIYGPGPDIANNATYGLYSTPISNGEG


 


TLSEVSFSPFYLKPFDESYGNYRSLVNIVNKFVKREFAPDPASTLMHELVHVTHNLYGIS


 


NRNFYYNFDTGKIETSRQQNSLIFEELLTFGGIDSKAISSLIIKKIIETAKNNYTTLISE


 


RLNTVTVENDLLKYIKNKIPVQGRLGNFKLDTAEFEKKLNTILFVLNESNLAQRFSILVR


 


KHYLKERPIDPIYVNILDDNSYSTLEGFNISSQGSNDFQGQLLESSYFEKIESNALRAFI


 


KICHKA SLYNKTLDCIEVENKDLFLISN


 


KDSLNDINLSEEKIKPETTVFFKDKLPPQDITLSNYDFTEANSIPSISQQNILERNEELY


 


EPIRNSLFEIKTIYVDKLTTFHFLEAQNIDESIDSSKIRVELTDSVDEALSNPNKVYSPF


 


KNMSNTINSIETGITSTYIFYQWLRSIVKDFSDETGKIDVIDKSSDTLAIVPYIGPLLNI


 


GNDIRHGDFVGAIELAGITALLEYVPEFTIPILVGLEVIGGELAREQVEAIVNNALDKRD


 


QKWAEVYNITKAQWWGTIHLQINTRLAHTYKALSRQANAIKMNMEFQLANYKGNIDDKAK


 


IKNAISETEILLNKSVEQAMKNTEKFMIKLSNSYLTKEMIPKVQDNLKNFDLETKKTLDK


 


FIKEKEDILGTNLSSSLRRKVSIRLNKNIAFDINDIPFSEFDDLINQYKNEIEDYEVLNL


 


GAEDGKIKDLSGTTSDINIGSDIE









EXAMPLES
Materials & Methods
Materials

    
    
        5 ml HiTrap Butyl HP (GE #: 28411005)
        5 ml HiTrap Q HP (GE #: 17-1154-01)
        5 ml HiTrap Phenyl HP column (GE #17-5195-01)
        CHT Type II column (Biorad #7324756)
        TrypZean (Sigma #T3568)
        Lys-C(Sigma #000000011047825001)
        Enterokinase, light chain (NEB #P8070)
        Factor Xa (NEB #P8010)
        ACQUITY UPLC Protein BEH C4 Column (Waters #186004495)
    
    


Protein Purification
E. coli BL21 (DE3) or NiCo (DE3) (NEB) were utilized for protein expression. In general, bacteria were cultured at 37° C. until induction, temperature was dropped to 16° C. and protein expression was induced with 1 mM IPTG overnight.
BoNT/AC with a C1 Loop (SEQ ID NO: 13)
Bacterial pellets were disrupted in lysis buffer (50 mM Tris-HCl pH=8) by sonication and clarified by centrifugation. Ammonium sulphate concentration was adjusted to 1.3M and target protein was captured using Butyl HP resin (GE). Fractions containing target protein were desalted and loaded onto Q HP resin (GE). Purified protein was activated overnight at 4° C. with 6 μg/1 mg of BoNT Factor Xa (NEB), followed by polishing using Phenyl HP resin (GE).
BoNT/E with a C1 Loop (SEQ ID NO: 11)
Bacterial pellets were disrupted in lysis buffer (100 mM sodium phosphate pH=7.8; 100 mM NaCl) by sonication and clarified by centrifugation. Ammonium sulphate concentration was adjusted to 1.25 M and target protein was captured using Butyl HP resin (GE). Fractions containing target protein were desalted and loaded onto Q HP resin (GE). Purified protein was activated overnight at 4° C. with either 5 μg/1 mg of BoNT Factor Xa (NEB) or 80 U/ml of Enterokinase (NEB), followed by polishing using CHT Type II resin (Biorad).
BoNT/X (SEQ ID NO: 5)
Bacterial pellets were disrupted in lysis buffer (50 mM Tris-HCl pH=8, 500 mM NaCl) by sonication and clarified by centrifugation. Target protein was captured using HisTrap HP column (GE). Fractions containing target protein were desalted and loaded onto Q HP resin (GE). Purified protein was activated overnight at 4° C. with either 5 μg/1 mg of BoNT Factor Xa (NEB) or 80 U/1 mg of BoNT of Enterokinase (NEB), followed by polishing using 1 ml HisTrap column (GE).
LC/MS
Samples were buffer exchanged into 50 mM ammonium bicarbonate prior to analysis. Samples were either intact protein or reduced by incubation with 10 mM DTT for 30 minutes at 37° C. Samples were tested using Waters Acquity H-Class UPLC system combined with Waters Xevo G2-XS QToF mass spectrometer.

    
    
        Mobile phase A 0.1% formic acid in water
        Mobile phase B 0.1% formic acid in acetonitrile
        Column: ACQUITY UPLC Protein BEH C4 (Waters)
    
    


Example 1
The BoNT/C1 Activation Loop can be Cleaved by Multiple Proteases
Inactive BoNT/C1 (0) (SEQ ID NO: 15) was incubated with a set of proteases: trypsin, Lys-C, enterokinase and Factor Xa. All proteases showed cleavage within the activation loop. BoNT/C1 (0) (SEQ ID NO: 15) was digested with enterokinase (EK) or factor Xa (FXa) overnight at 4° C. and 25° C. In addition, BoNT/C1 (0) was trypsin digested over a 16 hr timecourse at 20° C. (FIGS. 2 A, B). All three proteases can cleave the BoNT/C1 activation loop and create a di-chain molecule when compared to protease untreated control. However, additional cleavage products were visible after tryptic and Lys-C digest.
Example 2
Characterisation and Improvement of BoNT/X Proteolytic Activation
Partially purified wild-type BoNT/X-10HT (SEQ ID NO: 34) was incubated overnight at 4° C. with increasing amounts of trypsin (TrypZean) and Lys-C, as well as factor Xa (FXa) and enterokinase (EK).
FIG. 3 shows that wild-type BoNT/X was completely degraded by both Lys-C (FIG. 3A) and trypsin (FIG. 3B, lanes 12-13 and 15-17). Notably, FXa and EK were unable to cleave the protein into a di-chain form (FIG. 3B, lanes 18 and 19, respectively).
In an attempt to improve activation of BoNT/X, the BoNT/X activation loop was replaced by the BoNT/C1 activation loop (SEQ ID NO: 2) creating engineered BoNT protein SEQ ID NO: 5. The engineered BoNT was purified using several chromatographic steps and treated with enterokinase (EK) or factor Xa (FXa) to verify that the presence of BoNT/C loop allowed for production of a di-chain molecule. Surprisingly, FIG. 4 shows that EK and FXa specifically cleave engineered BoNT/X into the di-chain form.
Example 3
Characterisation and Improvement of BoNT/E Proteolytic Activation
Wild-type BoNT/E was cleaved with Lys-C and trypsin (TryZean). FIG. 5A shows that Lys-C inaccurately cleaves/degrades BoNT/E. Treatment with trypsin resulted in truncation of BoNT/E meaning an additional purification step was required to separate the full-length protein from the truncation product (FIG. 5B).
In an attempt to improve activation of BoNT/E, the BoNT/E activation loop was replaced by the BoNT/C1 activation loop (SEQ ID NO: 2) creating engineered BoNT protein SEQ ID NO: 11. The engineered BoNT was purified using several chromatographic steps and treated with enterokinase (EK) or factor Xa (FXa) to verify that the presence of BoNT/C loop allowed for production of a di-chain molecule. Surprisingly, FIG. 6 shows that EK and FXa specifically cleave engineered BoNT/E into the di-chain form.
Example 4
Proteolytic Activation of a BoNT/A1C1 Chimera
The BoNT/C loop was introduced into a BoNT/A1C1 chimera (LHN/A1 with a C1 HC domain) to facilitate proteolytic protein activation. The BoNT/A1 activation loop of BoNT/A1C1 was replaced with a BoNT/C1 loop creating engineered BoNT protein SEQ ID NO: 13. The engineered BoNT was purified using several chromatographic steps and treated with factor Xa (FXa) to verify that the presence of BoNT/C loop allowed for production of a di-chain molecule. FIG. 7A shows that FXa specifically cleaves engineered BoNT/A1C1 into the di-chain form. For comparison purposes, wild-type Met BoNT/A1 (commercially available from MetabiologicsA1080116) containing the A1 activation loop was incubated with FXa and EK. FIG. 7B shows that FXa does not cleave the A1 activation loop, while EK cleaves with only minimal activity, and both FXa and EK results in formation of additional improper cleavage products (degradation products).
Example 5
BoNTs Containing the C1 Loop Retain SNARE Cleavage Activity
Rat primary cortical neurons were treated for 24 h with BoNT/A1C1 (SEQ ID NO: 13) of Example 4 containing the BoNT/C1 activation loop and purified recombinant BoNT/C1 (SEQ ID NO: 17). SNARE-dependent glutamate release from the cells stimulated by potassium chloride was measured after incubation (FIG. 8). These data confirm activity of clostridial neurotoxins modified to include the BoNT/C1 activation loop.
Example 6
Factor Xa and Enterokinase Cleave BoNT/C Activation Loop at the Same Site IDGR↓SL
Purified BoNT/E containing the BoNT/C1 loop (SEQ ID NO: 11) was activated by either enterokinase or factor Xa proteases and was incubated with 10 mM DTT to reduce disulphide bridges and separate light and heavy chain. Liquid chromatography-mass spectrometry analysis of intact protein mass was performed on reduced and non-reduced engineered BoNT/E (SEQ ID NO: 11) samples to map the cleavage sites of both proteases. Both proteases cleaved BoNT/E to produce light and heavy chain of the same size indicating that both enterokinase and factor Xa cleave at the same site (Table 1).







TABLE 1







Comparison of predicted and measured masses of engineered


BoNT/E (SEQ ID NO: 11)after cleavage at IDGR↓SL site


within the C-loop. Heavy chain mass indicates cleavage


at the predicted site by both enterokinase and factor Xa.











predicted
observed mass
observed mass



theoretical
after EK cleavage
after FXa cleavage



mass [Da]
[Da]
[Da]














intact
143952
143853 (FIG. 9) 
143850 (FIG. 11) 


molecule


light chain
47633
47518 (FIG. 10)
47518 (FIG. 12)


heavy chain
96337
96338 (FIG. 10)
96335 (FIG. 12)









Comparative Example 7
Insertion of a Protease Recognition Site into an Endogenous Loop
The BoNT/C1 activation loop is the only BoNT activation loop that contains a naturally occurring cleavage site for site specific proteases FXa (and surprisingly EK) (see FIG. 1). All other loops are cleaved by non-specific proteases such as trypsin or Lys-C. Cleavage by Lys-C and trypsin often leads to undesired protein truncation as the cleavage site is determined by protease accessibility rather than a specific recognition sequence.
Natural activation loops from different serotypes evolved to allow protease accessibility and process toxin into a di-chain form by Clostridium. Without wishing to be bound by theory, it is believed that mutating these loops to create a protease recognition site can lead to conformational changes, which could negatively affect cleavage efficiency.
To test this hypothesis, a polypeptide having the BoNT/A1 light chain and translocation domain (LHN/A1) was modified to include an EK protease recognition sequence DDDDK (SEQ ID NO: 44). The efficiency of proteolytic cleavage of modified LHN/A1 with EK was assessed and compared with cleavage of the wild-type A1 activation loop with Lys-C (note owing to an absence of EK recognition sites in the wild-type loop a direct comparison using EK is not possible). FIG. 13 shows that cleavage of the modified loop is much less efficient than the wild-type loop.
Example 8
Proteolytic Activation of a BoNT/XA Chimera
A BoNT/XA chimera containing the light chain and translocation domain of BoNT/X, the binding domain of BoNT/A1, and the BoNT/C1 activation loop was manufactured (SEQ ID NO: 7). FIG. 14 shows that the di-chain form of the engineered BoNT/XA chimera was produced following activation with FXa.
Example 9
Proteolytic Activation of a BoNT/XB Chimera
A BoNT/XB chimera containing the light chain and translocation domain of BoNT/X, the binding domain of BoNT/B, and the BoNT/C1 activation loop was manufactured (SEQ ID NO: 9). FIG. 15 shows that the di-chain form of the engineered BoNT/XB chimera was produced following activation with FXa.
All publications mentioned in the above specification are herein incorporated by reference. Various modifications and variations of the described methods and system of the present invention will be apparent to those skilled in the art without departing from the scope and spirit of the present invention. Although the present invention has been described in connection with specific preferred embodiments, it should be understood that the invention as claimed should not be unduly limited to such specific embodiments. Indeed, various modifications of the described modes for carrying out the invention which are obvious to those skilled in biochemistry and biotechnology or related fields are intended to be within the scope of the following claims.